Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq2756 407 2e-111 seq861 250 4e-64 seq649 250 4e-64 seq584 250 4e-64 >seq2756 Length=10097 Score = 407 bits (450), Expect = 2e-111 Identities = 246/256 (96%), Gaps = 3/256 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 5231 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 5174 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5173 CTCGTTTAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTT 5114 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 5113 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 5054 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5053 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 4994 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 4993 GCCATAGTCCCTCTAA 4978 Score = 250 bits (276), Expect = 4e-64 Identities = 195/229 (85%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| | | |||| | ||||| | ||||||||| ||| | Sbjct 4502 GTACAAAGGGCAGGGACGTAATCAGCACAAGCTAG-TGACTTGTACTTACTAGGGATT-C 4445 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| |||| ||| | |||||||| |||||||||| ||||||||| ||||||| |||| Sbjct 4444 CTCGTTCAAGAGCAATAGTTGCAATGCTCTATCCCCAGCACGATGAAGTTTCAAAAGATT 4385 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | || || |||| || ||||| ||| | ||||||||||||||||||||| Sbjct 4384 ACCCATATCTTCCGATAAAGGAAATGAACTCGATGACTTCATCAGTGTAGCGCGCGTGCG 4325 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4324 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 4276 >seq861 Length=32788 Score = 250 bits (276), Expect = 4e-64 Identities = 195/229 (85%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| | | |||| | ||||| | ||||||||| ||| | Sbjct 32434 GTACAAAGGGCAGGGACGTAATCAGCACAAGCTAG-TGACTTGTACTTACTAGGGATT-C 32377 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| |||| ||| | |||||||| |||||||||| ||||||||| ||||||| |||| Sbjct 32376 CTCGTTCAAGAGCAATAGTTGCAATGCTCTATCCCCAGCACGATGAAGTTTCAAAAGATT 32317 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | || || |||| || ||||| ||| | ||||||||||||||||||||| Sbjct 32316 ACCCATATCTTCCGATAAAGGAAATGAACTCGATGACTTCATCAGTGTAGCGCGCGTGCG 32257 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 32256 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 32208 >seq649 Length=42709 Score = 250 bits (276), Expect = 4e-64 Identities = 195/229 (85%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| | | |||| | ||||| | ||||||||| ||| | Sbjct 355 GTACAAAGGGCAGGGACGTAATCAGCACAAGCTAG-TGACTTGTACTTACTAGGGATT-C 412 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| |||| ||| | |||||||| |||||||||| ||||||||| ||||||| |||| Sbjct 413 CTCGTTCAAGAGCAATAGTTGCAATGCTCTATCCCCAGCACGATGAAGTTTCAAAAGATT 472 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | || || |||| || ||||| ||| | ||||||||||||||||||||| Sbjct 473 ACCCATATCTTCCGATAAAGGAAATGAACTCGATGACTTCATCAGTGTAGCGCGCGTGCG 532 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 533 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 581 >seq584 Length=89288 Score = 250 bits (276), Expect = 4e-64 Identities = 195/229 (85%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| | | |||| | ||||| | ||||||||| ||| | Sbjct 88934 GTACAAAGGGCAGGGACGTAATCAGCACAAGCTAG-TGACTTGTACTTACTAGGGATT-C 88877 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| |||| ||| | |||||||| |||||||||| ||||||||| ||||||| |||| Sbjct 88876 CTCGTTCAAGAGCAATAGTTGCAATGCTCTATCCCCAGCACGATGAAGTTTCAAAAGATT 88817 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | || || |||| || ||||| ||| | ||||||||||||||||||||| Sbjct 88816 ACCCATATCTTCCGATAAAGGAAATGAACTCGATGACTTCATCAGTGTAGCGCGCGTGCG 88757 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 88756 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 88708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751918437140