Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq861 147 1e-33 seq649 147 1e-33 seq584 147 1e-33 seq2756 122 5e-26 >seq861 Length=32788 Score = 147 bits (162), Expect = 1e-33 Identities = 105/120 (88%), Gaps = 3/120 (3%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA---AAATGATAACATCG 57 ||||||||| |||||| |||| ||||||| ||||| |||||| ||| ||||||| Sbjct 31904 GAACCCAAACACTTTGGTTTCCCGTAAGGCGCCGAATGAGTCATTAAAAAATTAACATCA 31845 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 31844 TCCGATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 31785 >seq649 Length=42709 Score = 147 bits (162), Expect = 1e-33 Identities = 105/120 (88%), Gaps = 3/120 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA---AAATGATAACATCG 57 ||||||||| |||||| |||| ||||||| ||||| |||||| ||| ||||||| Sbjct 885 GAACCCAAACACTTTGGTTTCCCGTAAGGCGCCGAATGAGTCATTAAAAAATTAACATCA 944 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 945 TCCGATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 1004 >seq584 Length=89288 Score = 147 bits (162), Expect = 1e-33 Identities = 105/120 (88%), Gaps = 3/120 (3%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA---AAATGATAACATCG 57 ||||||||| |||||| |||| ||||||| ||||| |||||| ||| ||||||| Sbjct 88404 GAACCCAAACACTTTGGTTTCCCGTAAGGCGCCGAATGAGTCATTAAAAAATTAACATCA 88345 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 88344 TCCGATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 88285 >seq2756 Length=10097 Score = 122 bits (134), Expect = 5e-26 Identities = 97/117 (83%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| ||||||||| ||||| || |||||| | Sbjct 3972 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCAGTGGAGTCCTAAAAGCAACATCCACT 3913 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 3912 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 3856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278370778440