Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq861 340 3e-91 seq649 340 3e-91 seq584 340 3e-91 seq2756 233 4e-59 seq1401 134 3e-29 seq864 102 1e-19 seq660 82.4 1e-13 >seq861 Length=32788 Score = 340 bits (376), Expect = 3e-91 Identities = 244/280 (87%), Gaps = 1/280 (0%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98 ||||| || | | ||||| |||||| ||||| |||||||||||||||||||||||| Sbjct 31505 ATGCCATTAATTTGGTGTTGCGGGGAATTTGGACTGTTACTTTGAAAAAATTAGAGTGTT 31564 Query 99 CAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158 |||||| || ||| |||||||||||||||||||||| |||||||||| || | | Sbjct 31565 TAAAGCAAGCTAACGCTTGAATACATTAGCATGGAATAATGAAATAGGACGTTCGATCTT 31624 Query 159 ATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTAT 218 ||||||||||||||||||| | |||||||||||||||||||||| ||||| | ||||| Sbjct 31625 ATTTTGTTGGTTTCTAGGATTGACGTAATGATTAATAGGGATAGTTGGGGGCATTAGTAT 31684 Query 219 TCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCA 278 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 31685 TCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCATTTG 31744 Query 279 CCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||||||||||||||||||||| |||||||||||||||| Sbjct 31745 CCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTAGGGG 31783 >seq649 Length=42709 Score = 340 bits (376), Expect = 3e-91 Identities = 244/280 (87%), Gaps = 1/280 (0%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98 ||||| || | | ||||| |||||| ||||| |||||||||||||||||||||||| Sbjct 1284 ATGCCATTAATTTGGTGTTGCGGGGAATTTGGACTGTTACTTTGAAAAAATTAGAGTGTT 1225 Query 99 CAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158 |||||| || ||| |||||||||||||||||||||| |||||||||| || | | Sbjct 1224 TAAAGCAAGCTAACGCTTGAATACATTAGCATGGAATAATGAAATAGGACGTTCGATCTT 1165 Query 159 ATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTAT 218 ||||||||||||||||||| | |||||||||||||||||||||| ||||| | ||||| Sbjct 1164 ATTTTGTTGGTTTCTAGGATTGACGTAATGATTAATAGGGATAGTTGGGGGCATTAGTAT 1105 Query 219 TCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCA 278 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1104 TCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCATTTG 1045 Query 279 CCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||||||||||||||||||||| |||||||||||||||| Sbjct 1044 CCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTAGGGG 1006 >seq584 Length=89288 Score = 340 bits (376), Expect = 3e-91 Identities = 244/280 (87%), Gaps = 1/280 (0%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98 ||||| || | | ||||| |||||| ||||| |||||||||||||||||||||||| Sbjct 88005 ATGCCATTAATTTGGTGTTGCGGGGAATTTGGACTGTTACTTTGAAAAAATTAGAGTGTT 88064 Query 99 CAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158 |||||| || ||| |||||||||||||||||||||| |||||||||| || | | Sbjct 88065 TAAAGCAAGCTAACGCTTGAATACATTAGCATGGAATAATGAAATAGGACGTTCGATCTT 88124 Query 159 ATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTAT 218 ||||||||||||||||||| | |||||||||||||||||||||| ||||| | ||||| Sbjct 88125 ATTTTGTTGGTTTCTAGGATTGACGTAATGATTAATAGGGATAGTTGGGGGCATTAGTAT 88184 Query 219 TCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCA 278 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 88185 TCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCATTTG 88244 Query 279 CCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||||||||||||||||||||| |||||||||||||||| Sbjct 88245 CCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTAGGGG 88283 >seq2756 Length=10097 Score = 233 bits (258), Expect = 4e-59 Identities = 203/248 (82%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 3609 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 3668 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | |||| ||||| ||||| | ||| || |||||||| Sbjct 3669 GGGATAACATCATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGATCGGAGTAATGAT 3727 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| ||||||||| | ||||| || |||||||||||||||||||||||||| Sbjct 3728 TAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 3787 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||| ||||||||||| || |||||||||||||||||||||| |||||||| Sbjct 3788 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 3846 Query 311 GTTAGGGG 318 ||| |||| Sbjct 3847 GTTGGGGG 3854 >seq1401 Length=18825 Score = 134 bits (148), Expect = 3e-29 Identities = 145/194 (75%), Gaps = 26/194 (13%) Strand=Plus/Plus Query 76 TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAAT 135 || || |||||||||| |||||| ||||||||| | ||| |||| | Sbjct 5027 TAGTTAGAAAAAATTAAAGTGTTTAAAGCAGGCTATCGCTTGAAT--------------T 5072 Query 136 AATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATA 195 |||| ||||| | |||||||||||||||||||| | |||||||||||||| Sbjct 5073 AATAAGATAGGTC--------CTATTTTGTTGGTTTCTAGGTTTGACGTAATGATTAATA 5124 Query 196 GGGATAGTCGGGGGT-GTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAA 254 || ||||| |||||| || ||||||||||||||||||||||| |||||||||| || | Sbjct 5125 GGAATAGTTGGGGGTCATCCGTATTCAATTGTCAGAGGTGAAAATCTTGGATTTTTTTTA 5184 Query 255 ---GACTAACTACT 265 ||||||||||| Sbjct 5185 TTGGACTAACTACT 5198 Score = 80.6 bits (88), Expect = 5e-13 Identities = 63/73 (86%), Gaps = 3/73 (4%) Strand=Plus/Plus Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305 ||||||| ||||||||||||||||| | || |||||| ||||||||||||||| ||| Sbjct 5279 TTTATTG--GACTAACTACTGCGAAATCATTTGCCAAGGGTGTTTTCATTAATCA-AGAA 5335 Query 306 CGAAAGTTAGGGG 318 ||||| ||||||| Sbjct 5336 CGAAAATTAGGGG 5348 >seq864 Length=62394 Score = 102 bits (112), Expect = 1e-19 Identities = 156/222 (70%), Gaps = 28/222 (13%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAA 134 |||||||||||||||||| ||||| |||| |||| | ||| |||| ||||| |||| || Sbjct 13709 TTACTTTGAAAAAATTAGTGTGTTTAAAGTAGGCTATCGCTTGAATCCATTATCATGAAA 13768 Query 135 TAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAG-GACCGCCGTAATGATTAA 193 |||| ||||| | || |||||| || || ||||||| | |||||||||| Sbjct 13769 TAATGAAATAGAATGT----TTCTATCTTTTT--TTTCTAGATTTTAACTTAATGATTAA 13822 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 || ||||||| ||| | ||||||||| | || |||||||||||| Sbjct 13823 TAAGGATAGTTAGGG---------TCCAATTGTCA-AAGTAAAATTCTTGGAT------- 13865 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATT 295 || |||| ||| ||| || | |||||| |||||||| Sbjct 13866 ----AAATTACTACGATAGCATTTGCTAAGGATATTTTCATT 13903 >seq660 Length=38933 Score = 82.4 bits (90), Expect = 1e-13 Identities = 132/189 (70%), Gaps = 17/189 (9%) Strand=Plus/Plus Query 62 GGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATA 121 |||| |||||| ||||||||||||||||| || || || | | | ||| Sbjct 8036 GGAGTTAGGACTGTTACTTTGAAAAAATTAATGTATTTAATGTA---------TTAAATC 8086 Query 122 CATTAGCATGGAATAATAGAAT-----AGGACGTGCGGTTCTATTTTGTTGGTTTCTAGG 176 |||||||||| |||||| ||| |||| || | | | |||| ||| || || | Sbjct 8087 CATTAGCATGTAATAATGAAATACTGCAGGATGTTCCTATTTTTTTTTTTGATTCCTGGA 8146 Query 177 ACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAA 236 | |||||||||||| ||||||| || | | ||||||||||||||| | || || Sbjct 8147 TTTTACCTAATGATTAATAAGGATAGTTGGAG--CTTAGTATTCAATTGTCA-AAGTAAA 8203 Query 237 ATTCTTGGA 245 ||||||||| Sbjct 8204 ATTCTTGGA 8212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915097534208