Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq2523 369 2e-99 seq2756 241 5e-61 seq121 179 2e-42 seq695 165 3e-38 seq13 154 6e-35 seq953 131 7e-28 seq1407 87.8 7e-15 seq187 80.6 1e-12 >seq2523 Length=5993 Score = 369 bits (408), Expect = 2e-99 Identities = 267/305 (88%), Gaps = 4/305 (1%) Strand=Plus/Plus Query 380 AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAAC 439 |||||| || |||||||| | ||| || ||||||||| |||||||||||||||||||||| Sbjct 16 AGGATGTTGACGTAATGGCTTTAAACGACCCGTCTTGAAACACGGACCAAGGAGTCTAAC 75 Query 440 ATCTATGCGAGTGTTTGGGTG-TCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGG 498 || |||||||||||| ||||| | |||||| | |||||||||||||| || |||||| Sbjct 76 ATATATGCGAGTGTTAGGGTGATTAAACCCTTACGCGTAATGAAAGT-AATTTTGGTGGG 134 Query 499 AACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGC 558 ||| | | | ||||||||||||||||| ||| | || ||| ||||||||||||||| Sbjct 135 AACACTTTTG--TGCACCATCGACCGATCAGGATATTTTTTGATAGATTTGAGTAAGAGC 192 Query 559 ATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAA 618 ||| ||| | |||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 193 ATATCTGCTAGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGTCAGAGGAAA 252 Query 619 CTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGG 678 ||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||| Sbjct 253 CTCTGATGGAGGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG 312 Query 679 GGCGA 683 ||||| Sbjct 313 GGCGA 317 >seq2756 Length=10097 Score = 241 bits (266), Expect = 5e-61 Identities = 227/284 (80%), Gaps = 9/284 (3%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCA 463 |||||||||||| ||||||||||||||||||| |||| | ||||||| ||||| | | Sbjct 6653 CGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGTGATTA 6712 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCC---GTGAGGGTGCACCATC 519 ||||||| | || || ||| ||| || || || ||| ||| ||||||||| | Sbjct 6713 AACCCGTAAGGCGCAAGGAAGCTGATTGGCGG---GATCCCCCTGTG-GGGTGCACCGCC 6768 Query 520 GACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAG 579 |||||| | |||| | | || || || |||| |||||| |||| |||||||||||| Sbjct 6769 GACCGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATTCCTGTCGGGACCCGAAAG 6828 Query 580 ATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCG 639 |||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| Sbjct 6829 ATGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCG 6888 Query 640 GTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 6889 ATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 6932 Score = 158 bits (174), Expect = 5e-36 Identities = 134/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || |||||||| |||||||||||||||||| | || ||| |||||||| | || || || Sbjct 6266 TCTACGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGC 6325 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 |||||| ||| ||||||||||||| ||||||| | || ||||||||||||| |||| Sbjct 6326 TAAATACAGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACTT 6385 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| ||| || | ||||||||| | ||||||||| Sbjct 6386 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 6430 >seq121 Length=93473 Score = 179 bits (198), Expect = 2e-42 Identities = 120/134 (90%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 510 GTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGG 569 |||||||||||||||||| ||| | || ||| ||||||||||||||||| ||| | | Sbjct 22286 GTGCACCATCGACCGATCAGGATATTTTTTGATAGATTTGAGTAAGAGCATGTCTGCTAG 22227 Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 22226 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGTCAGAGGAAACTCTGATGGAG 22167 Query 630 GCTCGCAGCGGTTC 643 ||||| |||||||| Sbjct 22166 GCTCGTAGCGGTTC 22153 >seq695 Length=42890 Score = 165 bits (182), Expect = 3e-38 Identities = 137/164 (84%), Gaps = 4/164 (2%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| ||||||| | || ||||||| ||||||||||||||||||| |||| ||||||| Sbjct 24905 GAGTCAAGTTGTT-GCGATTGCAGCTTAAAATGGGAGGTAAATTTCTCCTAAGGCTAAAT 24963 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| || ||| |||||| ||||||| |||| ||||||||||||| |||| | || Sbjct 24964 AACGGC--GAAACCAATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTT-GAAA 25020 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTG 203 ||||||||||| || ||||||||||||||||| |||| || ||| Sbjct 25021 AGAGAGTTAAATAGTACGTGAAATTGTTGAAAAGGAAACGATTG 25064 Score = 158 bits (174), Expect = 5e-36 Identities = 111/127 (87%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 70 ATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAG 129 ||||||||||||||||| |||| |||||||| ||| ||||||| |||||| |||||| Sbjct 33604 ATGGGAGGTAAATTTCTCCTAAGGCTAAATAACGGCGAGAGACCAATAGCGAACAAGTTC 33663 Query 130 AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGA 189 |||| ||||||||||||| |||||| ||||||||||||| || ||||||||||||||| Sbjct 33664 CGTGAGGGAAAGATGAAAAGAACTTTGAAAAGAGAGTTAAATAGTACGTGAAATTGTTGA 33723 Query 190 AAGGGAA 196 ||||||| Sbjct 33724 AAGGGAA 33730 >seq13 Length=185732 Score = 154 bits (170), Expect = 6e-35 Identities = 107/120 (89%), Gaps = 1/120 (1%) Strand=Plus/Plus Query 562 GCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTC 621 |||| | |||||||||||||||| ||||||| |||||||| |||||| | |||||||||| Sbjct 62581 GCTGCTAGGACCCGAAAGATGGTAAACTATGTCTGAATAGAGTGAAGTC-GAGGAAACTC 62639 Query 622 TGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 || |||| ||||| |||||||||| ||||||||| |||||||||||||||||||||| || Sbjct 62640 TGATGGAAGCTCGTAGCGGTTCTGACGTGCAAATTGATCGTCAAATTTGGGTATAGGAGC 62699 >seq953 Length=29662 Score = 131 bits (144), Expect = 7e-28 Identities = 98/115 (85%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 59 TGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAG 118 ||||||| ||||| |||||||||||||||||| ||||||||| ||| |||||| ||||| Sbjct 24024 TGCAGCTTAAAATGAGAGGTAAATTTCTTCTAAGGCTAAATATCGGCGAGAGACTGATAG 23965 Query 119 CGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAG 173 || ||||||| |||| ||||||||||| |||||| ||||||||||||| || Sbjct 23964 CGAACAAGTACCGTGAAAAAAAGATGAAAAATACTTTGAAAAGAGAGTTAAATAG 23910 >seq1407 Length=39994 Score = 87.8 bits (96), Expect = 7e-15 Identities = 73/86 (85%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 591 TGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTG 650 |||||||||||||||||| | |||||||||||| |||||||||| |||||||| || Sbjct 20685 TGCCTGAATAGGGTGAAGTC-GAGGAAACTCTGATGGAGGCTCGTAGCGGTTC--ATATG 20741 Query 651 CAAATCGATCGTCAAATTTGGGTATA 676 ||||| ||||||||| || |||||| Sbjct 20742 CAAATTAATCGTCAAACTT-GGTATA 20766 >seq187 Length=82892 Score = 80.6 bits (88), Expect = 1e-12 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| | ||||| |||||||||||| ||||||| ||||||||||||||||||| |||| | Sbjct 38295 TTCTAAGAGTCAAGTTGTTTGGGATTGCAGCTTAAAATGGGAGGTAAATTTCTCCTAAGG 38354 Query 94 CTAA 97 |||| Sbjct 38355 CTAA 38358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079759845800