Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq861 345 7e-93 seq649 345 7e-93 seq584 345 7e-93 seq2756 340 3e-91 >seq861 Length=32788 Score = 345 bits (382), Expect = 7e-93 Identities = 232/258 (90%), Gaps = 1/258 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || || | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 32289 ACTCGATGACTTCATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 32230 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||||| || | | || |||||||||||||||||| || Sbjct 32229 CCTGTTATTGCCTCAAACTTCCATCGGTTAAACACCGATAGTCCCTCTAAGAAGCTGGCG 32170 Query 122 ACC-AACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 ||| ||| || | | ||||||||||||||||||||||||||||||| |||||||| Sbjct 32169 ACCTAACAATGTTAGGCCTAGCTATTTAGCAGGTTAAGGTCTCGTTCGTTAACGGAATTA 32110 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 32109 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 32050 Query 241 AAGAGCTATCAATCTGTC 258 ||||||| |||||||||| Sbjct 32049 AAGAGCTCTCAATCTGTC 32032 >seq649 Length=42709 Score = 345 bits (382), Expect = 7e-93 Identities = 232/258 (90%), Gaps = 1/258 (0%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || || | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 500 ACTCGATGACTTCATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 559 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||||| || | | || |||||||||||||||||| || Sbjct 560 CCTGTTATTGCCTCAAACTTCCATCGGTTAAACACCGATAGTCCCTCTAAGAAGCTGGCG 619 Query 122 ACC-AACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 ||| ||| || | | ||||||||||||||||||||||||||||||| |||||||| Sbjct 620 ACCTAACAATGTTAGGCCTAGCTATTTAGCAGGTTAAGGTCTCGTTCGTTAACGGAATTA 679 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 680 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 739 Query 241 AAGAGCTATCAATCTGTC 258 ||||||| |||||||||| Sbjct 740 AAGAGCTCTCAATCTGTC 757 >seq584 Length=89288 Score = 345 bits (382), Expect = 7e-93 Identities = 232/258 (90%), Gaps = 1/258 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || || | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 88789 ACTCGATGACTTCATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 88730 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||||| || | | || |||||||||||||||||| || Sbjct 88729 CCTGTTATTGCCTCAAACTTCCATCGGTTAAACACCGATAGTCCCTCTAAGAAGCTGGCG 88670 Query 122 ACC-AACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 ||| ||| || | | ||||||||||||||||||||||||||||||| |||||||| Sbjct 88669 ACCTAACAATGTTAGGCCTAGCTATTTAGCAGGTTAAGGTCTCGTTCGTTAACGGAATTA 88610 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 88609 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 88550 Query 241 AAGAGCTATCAATCTGTC 258 ||||||| |||||||||| Sbjct 88549 AAGAGCTCTCAATCTGTC 88532 >seq2756 Length=10097 Score = 340 bits (376), Expect = 3e-91 Identities = 231/258 (90%), Gaps = 1/258 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || || | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4357 ACTCGATGACTTCATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 4298 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||||| || | | || |||||||||||||||||| || Sbjct 4297 CCTGTTATTGCCTCAAACTTCCATCGGTTAAACACCGATAGTCCCTCTAAGAAGCTGGCG 4238 Query 122 ACC-AACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 ||| ||| || | | ||||||||||||||||||||||||||||||| |||||||| Sbjct 4237 ACCTAACAATGTTAGGCCTAGCTATTTAGCAGGTTAAGGTCTCGTTCGTTAACGGAATTA 4178 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4177 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 4118 Query 241 AAGAGCTATCAATCTGTC 258 ||||||| ||| |||||| Sbjct 4117 AAGAGCTCTCAGTCTGTC 4100 Score = 264 bits (292), Expect = 2e-68 Identities = 198/230 (86%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5087 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 5028 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | || ||| | |||||||||||||||||| ||| Sbjct 5027 CCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCATAGTCCCTCTAAGAAGCTGGCC 4968 Query 122 ACCAA-CCATA-GTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 || || || | |||| |||||||| | ||||||||||||||| ||||||| Sbjct 4967 GTGAAGGTGTACCTCCACATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 4908 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCA 229 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4907 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCA 4858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796713578076