Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq2756 96.9 2e-18 seq861 96.9 2e-18 seq649 96.9 2e-18 seq584 96.9 2e-18 >seq2756 Length=10097 Score = 96.9 bits (106), Expect = 2e-18 Identities = 76/86 (88%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||||||||| || ||||||||| ||||||||||| |||||||||| Sbjct 4551 TCCGAAGGC-CTCACTAAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 4495 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| || | |||||| Sbjct 4494 GGCAGGGACGTAAT-CAGCACAAGCT 4470 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Minus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| | Sbjct 5259 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 5202 Query 122 GCT 124 ||| Sbjct 5201 GCT 5199 >seq861 Length=32788 Score = 96.9 bits (106), Expect = 2e-18 Identities = 76/86 (88%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||||||||| || ||||||||| ||||||||||| |||||||||| Sbjct 32483 TCCGAAGGC-CTCACTAAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 32427 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| || | |||||| Sbjct 32426 GGCAGGGACGTAAT-CAGCACAAGCT 32402 >seq649 Length=42709 Score = 96.9 bits (106), Expect = 2e-18 Identities = 76/86 (88%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||||||||| || ||||||||| ||||||||||| |||||||||| Sbjct 306 TCCGAAGGC-CTCACTAAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 362 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| || | |||||| Sbjct 363 GGCAGGGACGTAAT-CAGCACAAGCT 387 >seq584 Length=89288 Score = 96.9 bits (106), Expect = 2e-18 Identities = 76/86 (88%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||||||||| || ||||||||| ||||||||||| |||||||||| Sbjct 88983 TCCGAAGGC-CTCACTAAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 88927 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| || | |||||| Sbjct 88926 GGCAGGGACGTAAT-CAGCACAAGCT 88902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300768427280