Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq861 203 3e-50 seq649 203 3e-50 seq584 203 3e-50 seq2756 127 2e-27 seq1401 100 3e-19 seq864 93.3 4e-17 >seq861 Length=32788 Score = 203 bits (224), Expect = 3e-50 Identities = 156/184 (85%), Gaps = 1/184 (1%) Strand=Plus/Plus Query 8 GGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACC 67 ||||| |||||||||||||||||||| ||| |||||| || ||| |||||||||| | Sbjct 31535 GGACTGTTACTTTGAAAAAATTAGAGTGTTTAAAGCAAGCTAACGCTTGAATACATTAGC 31594 Query 68 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAAT 127 |||||||||| |||||||||| || | |||||||| ||||||||||| | |||||| Sbjct 31595 ATGGAATAATGAAATAGGACGTTCGATCTTATTTTGTTGGTTTCTAGGATTG-ACGTAAT 31653 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 ||| |||| ||||||| ||||| | ||||||||||||||| |||||||||||||||||| Sbjct 31654 GATTAATAGGGATAGTTGGGGGCATTAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 31713 Query 188 TATT 191 |||| Sbjct 31714 TATT 31717 >seq649 Length=42709 Score = 203 bits (224), Expect = 3e-50 Identities = 156/184 (85%), Gaps = 1/184 (1%) Strand=Plus/Minus Query 8 GGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACC 67 ||||| |||||||||||||||||||| ||| |||||| || ||| |||||||||| | Sbjct 1254 GGACTGTTACTTTGAAAAAATTAGAGTGTTTAAAGCAAGCTAACGCTTGAATACATTAGC 1195 Query 68 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAAT 127 |||||||||| |||||||||| || | |||||||| ||||||||||| | |||||| Sbjct 1194 ATGGAATAATGAAATAGGACGTTCGATCTTATTTTGTTGGTTTCTAGGATTG-ACGTAAT 1136 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 ||| |||| ||||||| ||||| | ||||||||||||||| |||||||||||||||||| Sbjct 1135 GATTAATAGGGATAGTTGGGGGCATTAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 1076 Query 188 TATT 191 |||| Sbjct 1075 TATT 1072 >seq584 Length=89288 Score = 203 bits (224), Expect = 3e-50 Identities = 156/184 (85%), Gaps = 1/184 (1%) Strand=Plus/Plus Query 8 GGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACC 67 ||||| |||||||||||||||||||| ||| |||||| || ||| |||||||||| | Sbjct 88035 GGACTGTTACTTTGAAAAAATTAGAGTGTTTAAAGCAAGCTAACGCTTGAATACATTAGC 88094 Query 68 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAAT 127 |||||||||| |||||||||| || | |||||||| ||||||||||| | |||||| Sbjct 88095 ATGGAATAATGAAATAGGACGTTCGATCTTATTTTGTTGGTTTCTAGGATTG-ACGTAAT 88153 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 ||| |||| ||||||| ||||| | ||||||||||||||| |||||||||||||||||| Sbjct 88154 GATTAATAGGGATAGTTGGGGGCATTAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 88213 Query 188 TATT 191 |||| Sbjct 88214 TATT 88217 >seq2756 Length=10097 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 3609 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 3668 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| || || | ||| || ||||||| Sbjct 3669 GGGATAACATCATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGATCGGA-GTAATGA 3726 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 3727 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 3786 Query 190 T 190 | Sbjct 3787 T 3787 >seq1401 Length=18825 Score = 100 bits (110), Expect = 3e-19 Identities = 128/178 (72%), Gaps = 24/178 (13%) Strand=Plus/Plus Query 15 TACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCATGGAAT 74 || || |||||||||| || ||| ||||||||| | ||| |||| | Sbjct 5027 TAGTTAGAAAAAATTAAAGTGTTTAAAGCAGGCTATCGCTTGAAT--------------T 5072 Query 75 AATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAAT 134 |||| ||||| | ||||||||| |||||||||| | | |||||||| ||| Sbjct 5073 AATAAGATAGGTC--------CTATTTTGTTGGTTTCTAGGTTTGAC-GTAATGATTAAT 5123 Query 135 ACGGATAGTCGGGGGTG-TCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTATT 191 | | ||||| |||||| || |||||||||||||| |||||||| |||||||||| || Sbjct 5124 AGGAATAGTTGGGGGTCATCCGTATTCAATTGTCAGAGGTGAAAATCTTGGATTTTTT 5181 >seq864 Length=62394 Score = 93.3 bits (102), Expect = 4e-17 Identities = 125/173 (72%), Gaps = 16/173 (9%) Strand=Plus/Plus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCATGGAA 73 |||||||||||||||||| | ||| |||| |||| | ||| |||| ||||| |||| || Sbjct 13709 TTACTTTGAAAAAATTAGTGTGTTTAAAGTAGGCTATCGCTTGAATCCATTATCATGAAA 13768 Query 74 TAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAA 133 |||| ||||| | || |||||| || | ||||||| | ||||||| || Sbjct 13769 TAATGAAATAGAATGT----TTCTATCTTTT--TTTTCTAGATTTTAACTTAATGATTAA 13822 Query 134 TACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 || ||||||| ||| | ||||||||||| || |||||||||||| Sbjct 13823 TAAGGATAGTTAGGG---------TCCAATTGTCAAA-GTAAAATTCTTGGAT 13865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511944467840