Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq2756 351 2e-94 seq861 351 2e-94 seq649 351 2e-94 seq584 351 2e-94 >seq2756 Length=10097 Score = 351 bits (388), Expect = 2e-94 Identities = 266/311 (86%), Gaps = 2/311 (1%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCG-CTTTGGCGGGTCGCCGGCTTCTTA 78 || |||||||||||||||||||||||| ||||| | ||| ||||||| |||||||| Sbjct 4191 GAACGAGACCTTAACCTGCTAAATAGCTAGGCCTAACATTGTTAGGTCGCCAGCTTCTTA 4250 Query 79 GAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 137 ||||||||||||| | | |||||||||||||||||||||||||||||||||||||||| Sbjct 4251 GAGGGACTATCGGTGTTTAACCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 4310 Query 138 TAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGC 197 ||||||||||||||||||||||||||||||||| || || ||||||||| |||| Sbjct 4311 TAGATGTTCTGGGCCGCACGCGCGCTACACTGATGAAGTCATCGAGTTCATTTCCTTTAT 4370 Query 198 CGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTAT 257 |||||| | ||||||||||| | ||||| ||||||||||||||||||||||||| ||| Sbjct 4371 CGGAAGATATGGGTAATCTTTTGAAACTTCATCGTGCTGGGGATAGAGCATTGCAACTAT 4430 Query 258 TGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCC 317 ||||||| |||||||||| ||||||||| | |||| ||| | | |||||||||||| Sbjct 4431 TGCTCTTGAACGAGGAATCCCTAGTAAGTACAAGTCACTAGCTTGTGCTGATTACGTCCC 4490 Query 318 TGCCCTTTGTA 328 ||||||||||| Sbjct 4491 TGCCCTTTGTA 4501 Score = 297 bits (328), Expect = 4e-78 Identities = 257/316 (81%), Gaps = 12/316 (4%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCA------GGCCCGCTTTGGCGGGTCGCCGGCT 73 || |||||||| | |||||||| |||| | || | | || ||| || ||| Sbjct 4920 GAACGAGACCTCAGCCTGCTAACTAGCTATGTGGAGGTACACCTTCACGG----CCAGCT 4975 Query 74 TCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 ||||||||||||||| | || || | | |||||||||||||||||||||||||||||| Sbjct 4976 TCTTAGAGGGACTATGGCCTTTTAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGTGAT 5035 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192 |||||||||||||||||||||||||||||||||||||| | |||||||| || || Sbjct 5036 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCC 5095 Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252 ||||||| ||| | ||| |||||| | ||| | ||||| |||||||||| ||||||| Sbjct 5096 TTGGCCGACAGGCCCGGGAAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCA 5154 Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312 ||| ||| |||| |||||||||| ||||||||||||| ||||||||| |||||||| ||| Sbjct 5155 ATTGTTGGTCTTAAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTAC 5214 Query 313 GTCCCTGCCCTTTGTA 328 |||||||||||||||| Sbjct 5215 GTCCCTGCCCTTTGTA 5230 >seq861 Length=32788 Score = 351 bits (388), Expect = 2e-94 Identities = 266/311 (86%), Gaps = 2/311 (1%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCG-CTTTGGCGGGTCGCCGGCTTCTTA 78 || |||||||||||||||||||||||| ||||| | ||| ||||||| |||||||| Sbjct 32123 GAACGAGACCTTAACCTGCTAAATAGCTAGGCCTAACATTGTTAGGTCGCCAGCTTCTTA 32182 Query 79 GAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 137 ||||||||||||| | | |||||||||||||||||||||||||||||||||||||||| Sbjct 32183 GAGGGACTATCGGTGTTTAACCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 32242 Query 138 TAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGC 197 ||||||||||||||||||||||||||||||||| || || ||||||||| |||| Sbjct 32243 TAGATGTTCTGGGCCGCACGCGCGCTACACTGATGAAGTCATCGAGTTCATTTCCTTTAT 32302 Query 198 CGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTAT 257 |||||| | ||||||||||| | ||||| ||||||||||||||||||||||||| ||| Sbjct 32303 CGGAAGATATGGGTAATCTTTTGAAACTTCATCGTGCTGGGGATAGAGCATTGCAACTAT 32362 Query 258 TGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCC 317 ||||||| |||||||||| ||||||||| | |||| ||| | | |||||||||||| Sbjct 32363 TGCTCTTGAACGAGGAATCCCTAGTAAGTACAAGTCACTAGCTTGTGCTGATTACGTCCC 32422 Query 318 TGCCCTTTGTA 328 ||||||||||| Sbjct 32423 TGCCCTTTGTA 32433 >seq649 Length=42709 Score = 351 bits (388), Expect = 2e-94 Identities = 266/311 (86%), Gaps = 2/311 (1%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCG-CTTTGGCGGGTCGCCGGCTTCTTA 78 || |||||||||||||||||||||||| ||||| | ||| ||||||| |||||||| Sbjct 666 GAACGAGACCTTAACCTGCTAAATAGCTAGGCCTAACATTGTTAGGTCGCCAGCTTCTTA 607 Query 79 GAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 137 ||||||||||||| | | |||||||||||||||||||||||||||||||||||||||| Sbjct 606 GAGGGACTATCGGTGTTTAACCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 547 Query 138 TAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGC 197 ||||||||||||||||||||||||||||||||| || || ||||||||| |||| Sbjct 546 TAGATGTTCTGGGCCGCACGCGCGCTACACTGATGAAGTCATCGAGTTCATTTCCTTTAT 487 Query 198 CGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTAT 257 |||||| | ||||||||||| | ||||| ||||||||||||||||||||||||| ||| Sbjct 486 CGGAAGATATGGGTAATCTTTTGAAACTTCATCGTGCTGGGGATAGAGCATTGCAACTAT 427 Query 258 TGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCC 317 ||||||| |||||||||| ||||||||| | |||| ||| | | |||||||||||| Sbjct 426 TGCTCTTGAACGAGGAATCCCTAGTAAGTACAAGTCACTAGCTTGTGCTGATTACGTCCC 367 Query 318 TGCCCTTTGTA 328 ||||||||||| Sbjct 366 TGCCCTTTGTA 356 >seq584 Length=89288 Score = 351 bits (388), Expect = 2e-94 Identities = 266/311 (86%), Gaps = 2/311 (1%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCG-CTTTGGCGGGTCGCCGGCTTCTTA 78 || |||||||||||||||||||||||| ||||| | ||| ||||||| |||||||| Sbjct 88623 GAACGAGACCTTAACCTGCTAAATAGCTAGGCCTAACATTGTTAGGTCGCCAGCTTCTTA 88682 Query 79 GAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 137 ||||||||||||| | | |||||||||||||||||||||||||||||||||||||||| Sbjct 88683 GAGGGACTATCGGTGTTTAACCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 88742 Query 138 TAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGC 197 ||||||||||||||||||||||||||||||||| || || ||||||||| |||| Sbjct 88743 TAGATGTTCTGGGCCGCACGCGCGCTACACTGATGAAGTCATCGAGTTCATTTCCTTTAT 88802 Query 198 CGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTAT 257 |||||| | ||||||||||| | ||||| ||||||||||||||||||||||||| ||| Sbjct 88803 CGGAAGATATGGGTAATCTTTTGAAACTTCATCGTGCTGGGGATAGAGCATTGCAACTAT 88862 Query 258 TGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCC 317 ||||||| |||||||||| ||||||||| | |||| ||| | | |||||||||||| Sbjct 88863 TGCTCTTGAACGAGGAATCCCTAGTAAGTACAAGTCACTAGCTTGTGCTGATTACGTCCC 88922 Query 318 TGCCCTTTGTA 328 ||||||||||| Sbjct 88923 TGCCCTTTGTA 88933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947093951488