Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq3623 681 0.0 seq2523 681 0.0 seq1807 681 0.0 seq779 681 0.0 seq2756 141 3e-31 seq273 102 3e-19 >seq3623 Length=2819 Score = 681 bits (754), Expect = 0.0 Identities = 475/532 (89%), Gaps = 10/532 (2%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| ||||| ||||||||||||||| ||||| Sbjct 2205 CTTTTATTCTACATGAGATTTCTGTTCTCAATGAGCTACCCTTAGGACACCTGTGTTATC 2264 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 2265 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACATGGATC 2324 Query 127 GGCCCGCGAAGGAC--CTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATT 184 | | | || || ||||| || || ||| | ||| |||| ||| ||| ||| Sbjct 2325 ATCAC-CTAACGATGACTTAATTCCGAAAGTTGGGCAT--AAGCCCAGCTCCACTTAATT 2381 Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG--CCGAAACGGCTCCCA 242 || |||||||||||||||||| ||||||||||||||||| || || |||| |||||| Sbjct 2382 GAATAAGTAAAAAAACGATAAAGGTAGTGGTATTTCACTGTCGTGCCTAAACA-CTCCCA 2440 Query 243 CTTATTCTACA-CCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301 ||||| ||||| ||||| | ||| |||||||| ||| |||||||||||||||||||||| Sbjct 2441 CTTATCCTACACCCTCT-ATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGG 2499 Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 2500 TCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 2559 Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2560 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 2619 Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2620 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 2679 Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 2680 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 2731 >seq2523 Length=5993 Score = 681 bits (754), Expect = 0.0 Identities = 475/532 (89%), Gaps = 10/532 (2%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| ||||| ||||||||||||||| ||||| Sbjct 1808 CTTTTATTCTACATGAGATTTCTGTTCTCAATGAGCTACCCTTAGGACACCTGTGTTATC 1749 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 1748 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACATGGATC 1689 Query 127 GGCCCGCGAAGGAC--CTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATT 184 | | | || || ||||| || || ||| | ||| |||| ||| ||| ||| Sbjct 1688 ATCAC-CTAACGATGACTTAATTCCGAAAGTTGGGCAT--AAGCCCAGCTCCACTTAATT 1632 Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG--CCGAAACGGCTCCCA 242 || |||||||||||||||||| ||||||||||||||||| || || |||| |||||| Sbjct 1631 GAATAAGTAAAAAAACGATAAAGGTAGTGGTATTTCACTGTCGTGCCTAAACA-CTCCCA 1573 Query 243 CTTATTCTACACCTCTCAA-GTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301 ||||| ||||||| ||| | ||| |||||||| ||| |||||||||||||||||||||| Sbjct 1572 CTTATCCTACACC-CTCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGG 1514 Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1513 TCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 1454 Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1453 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 1394 Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1393 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 1334 Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1333 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 1282 >seq1807 Length=19749 Score = 681 bits (754), Expect = 0.0 Identities = 475/532 (89%), Gaps = 10/532 (2%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| ||||| ||||||||||||||| ||||| Sbjct 615 CTTTTATTCTACATGAGATTTCTGTTCTCAATGAGCTACCCTTAGGACACCTGTGTTATC 556 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 555 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACATGGATC 496 Query 127 GGCCCGCGAAGGAC--CTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATT 184 | | | || || ||||| || || ||| | ||| |||| ||| ||| ||| Sbjct 495 ATCAC-CTAACGATGACTTAATTCCGAAAGTTGGGCAT--AAGCCCAGCTCCACTTAATT 439 Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG--CCGAAACGGCTCCCA 242 || |||||||||||||||||| ||||||||||||||||| || || |||| |||||| Sbjct 438 GAATAAGTAAAAAAACGATAAAGGTAGTGGTATTTCACTGTCGTGCCTAAACA-CTCCCA 380 Query 243 CTTATTCTACACCTCTCAA-GTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301 ||||| ||||||| ||| | ||| |||||||| ||| |||||||||||||||||||||| Sbjct 379 CTTATCCTACACC-CTCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGG 321 Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 320 TCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 261 Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 260 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 201 Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 200 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 141 Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 140 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 89 >seq779 Length=47677 Score = 681 bits (754), Expect = 0.0 Identities = 475/532 (89%), Gaps = 10/532 (2%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| ||||| ||||||||||||||| ||||| Sbjct 615 CTTTTATTCTACATGAGATTTCTGTTCTCAATGAGCTACCCTTAGGACACCTGTGTTATC 556 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 555 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACATGGATC 496 Query 127 GGCCCGCGAAGGAC--CTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATT 184 | | | || || ||||| || || ||| | ||| |||| ||| ||| ||| Sbjct 495 ATCAC-CTAACGATGACTTAATTCCGAAAGTTGGGCAT--AAGCCCAGCTCCACTTAATT 439 Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG--CCGAAACGGCTCCCA 242 || |||||||||||||||||| ||||||||||||||||| || || |||| |||||| Sbjct 438 GAATAAGTAAAAAAACGATAAAGGTAGTGGTATTTCACTGTCGTGCCTAAACA-CTCCCA 380 Query 243 CTTATTCTACACCTCTCAA-GTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301 ||||| ||||||| ||| | ||| |||||||| ||| |||||||||||||||||||||| Sbjct 379 CTTATCCTACACC-CTCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGG 321 Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 320 TCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 261 Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 260 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 201 Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 200 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 141 Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 140 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 89 >seq2756 Length=10097 Score = 141 bits (156), Expect = 3e-31 Identities = 81/83 (98%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 453 CTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGC 512 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8265 CTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGC 8206 Query 513 AGAAATCACATTGCGTCAACATC 535 |||||||||||||||| | |||| Sbjct 8205 AGAAATCACATTGCGTTAGCATC 8183 >seq273 Length=89833 Score = 102 bits (112), Expect = 3e-19 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 262 GTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTC 321 ||| |||||||| ||| |||||||| ||| |||||| ||||||||||||||||||| Sbjct 56533 GTCTTTTCACAATGTCAAACTAGAGTTAAGTTCAACAAAATCTTCTTTCCCCGCTGATTT 56592 Query 322 CGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 ||||||| ||||| || |||||||||||||| || ||||| Sbjct 56593 TACCAAGCCACATCCCTCGGTTGTGGTTTCGCTAGGTAATAGAT 56636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635016923008