Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq1807 132 8e-29 seq3623 125 1e-26 seq2523 125 1e-26 seq779 125 1e-26 seq2756 102 1e-19 >seq1807 Length=19749 Score = 132 bits (146), Expect = 8e-29 Identities = 136/173 (79%), Gaps = 6/173 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| || || |||||| ||| || || ||| | | | Sbjct 940 GTACGAGAGGAACCGTTGA-TTCGGA-TATTTGGTTCATGCACCTATCCGACAGGATAAT 997 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 998 GGTGCGAAGCTACCATCCGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCTA 1057 Query 121 GAACGGGGTGATTCTCTCCTG---CACATCGTAGTCGGATACGAATAG-GCTT 169 ||||| | |||| | |||| || || |||| | ||| |||||| |||| Sbjct 1058 GAACGTGACGATTTTTACCTGACCCATATATTAGTTGTATAAGAATAGAGCTT 1110 >seq3623 Length=2819 Score = 125 bits (138), Expect = 1e-26 Identities = 114/141 (81%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| || || |||||| ||| || || ||| | | | Sbjct 1880 GTACGAGAGGAACCGTTGA-TTCGGA-TATTTGGTTCATGCACCTATCCGACAGGATAAT 1823 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 1822 GGTGCGAAGCTACCATCCGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCTA 1763 Query 121 GAACGGGGTGATTCTCTCCTG 141 ||||| | |||| | |||| Sbjct 1762 GAACGTGACGATTTTTACCTG 1742 >seq2523 Length=5993 Score = 125 bits (138), Expect = 1e-26 Identities = 114/141 (81%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| || || |||||| ||| || || ||| | | | Sbjct 2133 GTACGAGAGGAACCGTTGA-TTCGGA-TATTTGGTTCATGCACCTATCCGACAGGATAAT 2190 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 2191 GGTGCGAAGCTACCATCCGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCTA 2250 Query 121 GAACGGGGTGATTCTCTCCTG 141 ||||| | |||| | |||| Sbjct 2251 GAACGTGACGATTTTTACCTG 2271 >seq779 Length=47677 Score = 125 bits (138), Expect = 1e-26 Identities = 114/141 (81%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| || || |||||| ||| || || ||| | | | Sbjct 940 GTACGAGAGGAACCGTTGA-TTCGGA-TATTTGGTTCATGCACCTATCCGACAGGATAAT 997 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 998 GGTGCGAAGCTACCATCCGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCTA 1057 Query 121 GAACGGGGTGATTCTCTCCTG 141 ||||| | |||| | |||| Sbjct 1058 GAACGTGACGATTTTTACCTG 1078 >seq2756 Length=10097 Score = 102 bits (112), Expect = 1e-19 Identities = 98/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | | ||||| | ||| || ||| || |||| Sbjct 8824 GTACGAGAGGAACCGTTGA-TTC-GCACAGTTGGTCATCGCGCTTGGTTGAAAAGCCAGT 8881 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 8882 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 8941 Query 121 GAA 123 ||| Sbjct 8942 GAA 8944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819111148544