Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq861 659 0.0 seq649 659 0.0 seq584 659 0.0 seq2756 605 9e-171 seq263 118 3e-24 seq779 114 4e-23 seq1401 89.7 2e-15 >seq861 Length=32788 Score = 659 bits (730), Expect = 0.0 Identities = 455/510 (89%), Gaps = 6/510 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| ||| || ||||| ||| |||| |||||||||||||||||| Sbjct 31313 GTACTCATTCCAATTACGAGATCCTAAAGAACCCCGTATTGTTATTTATTGTCACTACCT 31254 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 31253 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCATCCTTGGATGTGGTAGCCGTT 31194 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||| ||| |||||| |||||||||||||| ||||||||| Sbjct 31193 TCTCAGGCTCCCTCTCCGGTGTCGTGCCCTAACACCCCGTTACCCGTTACCACCATGGTA 31134 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| |||||||||||||||||||||||||||||||||||||||||| ||||| || | Sbjct 31133 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATTCATCGTCGACG 31074 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCG---TT 297 || | ||| ||||||| |||||||||||||||||||||| | | | || || Sbjct 31073 TAAAGTCATACGATTCGAAAAGTTATTATGAATCACCAAGGGAATCGGTTGCCCGATATT 31014 Query 298 GGTTTTTTATCTAATAAATACA-CCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGC 355 |||||||||||||||||||||| |||||||| |||||||| | ||||||||||||||||| Sbjct 31013 GGTTTTTTATCTAATAAATACACCCCCTTCCAGAAGTCGGAGGTTTTAGCATGTATTAGC 30954 Query 356 TCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTT 415 ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 30953 TCTAGAATTACCACGGTTATCCAAGTAGTAAGGTACTATCAAATAAATTATAACTGATTT 30894 Query 416 AATGAGCCATTCGCAGTTTCA-CTGTATAGATTGCTTATACTTAGACATGCATGGCTTAA 474 ||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||| Sbjct 30893 AATGAGCCATTCGCAGTTTCACCTGTATAAACGATTTATACTTAGACATGCATGGCTTAA 30834 Query 475 TCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||| Sbjct 30833 TCTTTGAGACAAGCATATGACTACTGGCAG 30804 >seq649 Length=42709 Score = 659 bits (730), Expect = 0.0 Identities = 455/510 (89%), Gaps = 6/510 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| ||| || ||||| ||| |||| |||||||||||||||||| Sbjct 1476 GTACTCATTCCAATTACGAGATCCTAAAGAACCCCGTATTGTTATTTATTGTCACTACCT 1535 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1536 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCATCCTTGGATGTGGTAGCCGTT 1595 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||| ||| |||||| |||||||||||||| ||||||||| Sbjct 1596 TCTCAGGCTCCCTCTCCGGTGTCGTGCCCTAACACCCCGTTACCCGTTACCACCATGGTA 1655 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| |||||||||||||||||||||||||||||||||||||||||| ||||| || | Sbjct 1656 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATTCATCGTCGACG 1715 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCG---TT 297 || | ||| ||||||| |||||||||||||||||||||| | | | || || Sbjct 1716 TAAAGTCATACGATTCGAAAAGTTATTATGAATCACCAAGGGAATCGGTTGCCCGATATT 1775 Query 298 GGTTTTTTATCTAATAAATACA-CCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGC 355 |||||||||||||||||||||| |||||||| |||||||| | ||||||||||||||||| Sbjct 1776 GGTTTTTTATCTAATAAATACACCCCCTTCCAGAAGTCGGAGGTTTTAGCATGTATTAGC 1835 Query 356 TCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTT 415 ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 1836 TCTAGAATTACCACGGTTATCCAAGTAGTAAGGTACTATCAAATAAATTATAACTGATTT 1895 Query 416 AATGAGCCATTCGCAGTTTCA-CTGTATAGATTGCTTATACTTAGACATGCATGGCTTAA 474 ||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||| Sbjct 1896 AATGAGCCATTCGCAGTTTCACCTGTATAAACGATTTATACTTAGACATGCATGGCTTAA 1955 Query 475 TCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||| Sbjct 1956 TCTTTGAGACAAGCATATGACTACTGGCAG 1985 >seq584 Length=89288 Score = 659 bits (730), Expect = 0.0 Identities = 455/510 (89%), Gaps = 6/510 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| ||| || ||||| ||| |||| |||||||||||||||||| Sbjct 87813 GTACTCATTCCAATTACGAGATCCTAAAGAACCCCGTATTGTTATTTATTGTCACTACCT 87754 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 87753 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCATCCTTGGATGTGGTAGCCGTT 87694 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||| ||| |||||| |||||||||||||| ||||||||| Sbjct 87693 TCTCAGGCTCCCTCTCCGGTGTCGTGCCCTAACACCCCGTTACCCGTTACCACCATGGTA 87634 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| |||||||||||||||||||||||||||||||||||||||||| ||||| || | Sbjct 87633 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATTCATCGTCGACG 87574 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCG---TT 297 || | ||| ||||||| |||||||||||||||||||||| | | | || || Sbjct 87573 TAAAGTCATACGATTCGAAAAGTTATTATGAATCACCAAGGGAATCGGTTGCCCGATATT 87514 Query 298 GGTTTTTTATCTAATAAATACA-CCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGC 355 |||||||||||||||||||||| |||||||| |||||||| | ||||||||||||||||| Sbjct 87513 GGTTTTTTATCTAATAAATACACCCCCTTCCAGAAGTCGGAGGTTTTAGCATGTATTAGC 87454 Query 356 TCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTT 415 ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 87453 TCTAGAATTACCACGGTTATCCAAGTAGTAAGGTACTATCAAATAAATTATAACTGATTT 87394 Query 416 AATGAGCCATTCGCAGTTTCA-CTGTATAGATTGCTTATACTTAGACATGCATGGCTTAA 474 ||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||| Sbjct 87393 AATGAGCCATTCGCAGTTTCACCTGTATAAACGATTTATACTTAGACATGCATGGCTTAA 87334 Query 475 TCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||| Sbjct 87333 TCTTTGAGACAAGCATATGACTACTGGCAG 87304 >seq2756 Length=10097 Score = 605 bits (670), Expect = 9e-171 Identities = 445/511 (87%), Gaps = 9/511 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| |||| |||||| |||| |||||||||||||||||| Sbjct 3385 GTACTCATTCCAATTACCAGACTCAAA-GAGCCCGGTATTGTTATTTATTGTCACTACCT 3327 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3326 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 3267 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| |||||| ||| | ||| Sbjct 3266 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCGTAGTA 3207 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 3206 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGTGTCGCCGGCA 3147 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAG----GGCG 295 | |||||| |||||| ||| |||||| |||||||| | | | | | | || ||| Sbjct 3146 CAAAGGCCGTGCGATCCGTCGAGTTATCATGAATCATCGAAGCGACGGGCAGAGCCCGCG 3087 Query 296 TTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAG 354 | | ||||||||||||||| || ||||||| ||||||||||||| | ||| ||||||| Sbjct 3086 TCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAG 3027 Query 355 CTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATT 414 |||||||||||| |||||||||| |||| || ||| |||||| |||| |||||||||| Sbjct 3026 CTCTAGAATTACTACGGTTATCCGAGTAGCAA-ATACCATCAAACAAACTATAACTGATT 2968 Query 415 TAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCTTA 473 ||||||||||||||||||||||| || | ||| | | ||||||| |||||||||||||| Sbjct 2967 TAATGAGCCATTCGCAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATGGCTTA 2908 Query 474 ATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||| Sbjct 2907 ATCTTTGAGACAAGCATATGACTACTGGCAG 2877 >seq263 Length=76509 Score = 118 bits (130), Expect = 3e-24 Identities = 102/124 (82%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||||| | |||||||| | |||| ||| |||||||||||||| Sbjct 8538 TACTCATTCCAATTACAAAATCCAAAAGAAATC-GTATTGTTATCTATTGTCACTACCTT 8480 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 || ||||||||||||| ||||||| ||||| || |||||||| ||| ||||||||| Sbjct 8479 CC-GTGTCGGGATTGGATAATTTGTACGCCTTTCGCAATCCTTGGAAGTGATAGCCGTTT 8421 Query 122 CTCA 125 |||| Sbjct 8420 CTCA 8417 >seq779 Length=47677 Score = 114 bits (126), Expect = 4e-23 Identities = 104/130 (80%), Gaps = 12/130 (9%) Strand=Plus/Plus Query 2 TACTCATTCCAATTACAAGACCCAAAAGA----GCCCT--GTATCAGTATTTATTGTCAC 55 |||||||||||||||||||| ||||||| | | |||| ||||||||||||| Sbjct 6970 TACTCATTCCAATTACAAGATTCAAAAGAATATGTATTTAGTATTGTTATTTATTGTCAC 7029 Query 56 TACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG 115 |||||||||||||||||||||||||||||| | |||| || ||||||||| ||| Sbjct 7030 TACCTCCCCGTGTCGGGATTGGGTAATTTG------TACTGCAATCGTTGGATGTGATAG 7083 Query 116 CCGTTTCTCA 125 | |||||||| Sbjct 7084 CTGTTTCTCA 7093 >seq1401 Length=18825 Score = 89.7 bits (98), Expect = 2e-15 Identities = 103/136 (76%), Gaps = 6/136 (4%) Strand=Plus/Minus Query 218 ATTTGAATGAAC-CATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCAC 276 |||||||||| ||||| || | || | ||| |||||| |||||||||||||||| Sbjct 4903 ATTTGAATGATTTCATCGTCGACGTAAAGTCATAAGATTCGAAAAGTTATTATGAATCAT 4844 Query 277 CAAGGAGCCCCGAAGGGCG----TTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAG 331 |||| | || | | |||||||||||| ||||||||||||||||||| |||| Sbjct 4843 CAAGTGGAATCGGTTGCCCAATATTGGTTTTTTATTTAATAAATACACCCCTTCCAGAAG 4784 Query 332 TCGGGGTTTTTAGCAT 347 |||| ||||||||| Sbjct 4783 TCGGAAATTTTAGCAT 4768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510230895616