Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq54 154 1e-32 seq1647 86.0 5e-12 >seq54 Length=215934 Score = 154 bits (170), Expect = 1e-32 Identities = 233/331 (70%), Gaps = 3/331 (1%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||||||||| |||||||| || ||||| || ||||| || || | Sbjct 101414 ATCTGGCAAATGTACAAAAAGGCCGAAGCTTCATTTTGGACTGTTGAGGAAGTTGACCTT 101473 Query 61147 TCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAA--- 61203 ||||| || |||||||| |||||| | | | || |||| || | ||| ||| Sbjct 101474 TCCAAGGATATGAATGATTGGGAGTATAAACTTAACGATGAAGAAAAATTCTTTATTTCT 101533 Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 || || ||||| ||||||||||| ||||| ||||| |||||||| |||||| |||||||| Sbjct 101534 CACGTTTTGGCCTTCTTTGCCGCCTCGGATGGTATTGTCAATGAAAATTTAGTGGAACGT 101593 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 || | || || ||| | | || || | ||||| || || || ||||| || Sbjct 101594 TTTAGTAATGAAGTCCAAATTCCAGAAGCAAGATGTTTTTATGGATTTCAGATCATGATC 101653 Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCG 61383 || ||| |||| || || |||||| | | || ||| | || |||| ||||| | Sbjct 101654 GAAAATATCCATTCAGAAATGTACTCCCTCTTGATTGATTCTTATATCAAGGAGCCATCT 101713 Query 61384 GAACGTGAACGATTGTTCAATGCCATCGAGA 61414 || | ||| | ||| ||||||| |||| Sbjct 101714 CAAAGAGAATACCTATTCGATGCCATTGAGA 101744 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 61435 AAAGCGGATTGGGC-CTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATT 61493 |||||||||||||| |||| || |||| || || || |||||| |||||| | Sbjct 101844 AAAGCGGATTGGGCTCTTCGAT-GGATTTCCGATAAGGAATCTTCATTTGCTGAACGTCT 101902 Query 61494 GCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTG 61553 | || ||||| | || || || |||| || |||| | || || |||||||||| Sbjct 101903 TGTAGCGTTTGCCGCTGTTGAAGGAATATTCTTTTCTGGAGCTTTCGCGTCAATCTTTTG 101962 Query 61554 GTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGA 61613 ||| |||||| | ||| | ||||| || | || || ||| || | || || || || Sbjct 101963 GTTAAAGAAAAGAGGAATGATGCCAGGATTAACTTTTTCCAACGAACTAATTTCTCGAGA 102022 Query 61614 CGAGGGCATGCATTGTGATTTTGC 61637 || || |||||||||||||||| Sbjct 102023 TGAAGGATTGCATTGTGATTTTGC 102046 >seq1647 Length=14880 Score = 86.0 bits (94), Expect = 5e-12 Identities = 197/297 (66%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 |||||| ||||| | | ||| || || || || | ||| ||||| || || || | Sbjct 3327 CATAAAAAGATCCGAAACCCAAAGTGCATAAAATAAATCCCGTGCACGAACTTCTTCTTT 3268 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 || |||||| || || | || ||||| ||||| | |||||| | ||| | || Sbjct 3267 TCCAGTATTTTTTTTTAAATCCATAAAATCAAAAATGTCAGGATGCCACGTTTCTAAATA 3208 Query 66460 GATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTT 66519 || || |||| |||| ||||||| || ||||| || || || | ||| ||| || Sbjct 3207 AATAGCAAACGCGCCCGGACGTTTGTTTCCTCCTTGATCAACATATCTAGCAGTATTATT 3148 Query 66520 GAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGA 66579 | || || ||||| || | | || || || | ||||| || || | || || Sbjct 3147 ATAAACGCGTAACATGGGAATAATTCCATTTGAATAACCATTTGTTCCAGCAATATAAGA 3088 Query 66580 TCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGAT 66636 |||| || || || | |||| |||| |||||||||||| || ||||| || || Sbjct 3087 TCCTGTCGCACGAATGTTATGAATGTTCACACCAATACCACCTGCAGTCTTAGAAAT 3031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397513751349440