Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq539 250 4e-64 >seq539 Length=48646 Score = 250 bits (276), Expect = 4e-64 Identities = 195/229 (85%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| | | |||| | ||||| | ||||||||| ||| | Sbjct 42251 GTACAAAGGGCAGGGACGTAATCAGCACAAGCTAG-TGACTTGTACTTACTAGGGATT-C 42194 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| |||| ||| | |||||||| |||||||||| ||||||||| ||||||| |||| Sbjct 42193 CTCGTTCAAGAGCAATAGTTGCAATGCTCTATCCCCAGCACGATGAAGTTTCAAAAGATT 42134 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | || || |||| || ||||| ||| | ||||||||||||||||||||| Sbjct 42133 ACCCATATCTTCCGATAAAGGAAATGAACTCGATGACTTCATCAGTGTAGCGCGCGTGCG 42074 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 42073 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 42025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751925314180