Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq539 340 3e-91 seq1417 134 3e-29 seq337 102 1e-19 seq1289 80.6 5e-13 >seq539 Length=48646 Score = 340 bits (376), Expect = 3e-91 Identities = 244/280 (87%), Gaps = 1/280 (0%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98 ||||| || | | ||||| |||||| ||||| |||||||||||||||||||||||| Sbjct 41322 ATGCCATTAATTTGGTGTTGCGGGGAATTTGGACTGTTACTTTGAAAAAATTAGAGTGTT 41381 Query 99 CAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158 |||||| || ||| |||||||||||||||||||||| |||||||||| || | | Sbjct 41382 TAAAGCAAGCTAACGCTTGAATACATTAGCATGGAATAATGAAATAGGACGTTCGATCTT 41441 Query 159 ATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTAT 218 ||||||||||||||||||| | |||||||||||||||||||||| ||||| | ||||| Sbjct 41442 ATTTTGTTGGTTTCTAGGATTGACGTAATGATTAATAGGGATAGTTGGGGGCATTAGTAT 41501 Query 219 TCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCA 278 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 41502 TCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCATTTG 41561 Query 279 CCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||||||||||||||||||||| |||||||||||||||| Sbjct 41562 CCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTAGGGG 41600 >seq1417 Length=19463 Score = 134 bits (148), Expect = 3e-29 Identities = 145/194 (75%), Gaps = 26/194 (13%) Strand=Plus/Plus Query 76 TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAAT 135 || || |||||||||| |||||| ||||||||| | ||| |||| | Sbjct 5496 TAGTTAGAAAAAATTAAAGTGTTTAAAGCAGGCTATCGCTTGAAT--------------T 5541 Query 136 AATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATA 195 |||| ||||| | |||||||||||||||||||| | |||||||||||||| Sbjct 5542 AATAAGATAGGTC--------CTATTTTGTTGGTTTCTAGGTTTGACGTAATGATTAATA 5593 Query 196 GGGATAGTCGGGGGT-GTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAA 254 || ||||| |||||| || ||||||||||||||||||||||| |||||||||| || | Sbjct 5594 GGAATAGTTGGGGGTCATCCGTATTCAATTGTCAGAGGTGAAAATCTTGGATTTTTTTTA 5653 Query 255 ---GACTAACTACT 265 ||||||||||| Sbjct 5654 TTGGACTAACTACT 5667 Score = 80.6 bits (88), Expect = 5e-13 Identities = 63/73 (86%), Gaps = 3/73 (4%) Strand=Plus/Plus Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305 ||||||| ||||||||||||||||| | || |||||| ||||||||||||||| ||| Sbjct 5748 TTTATTG--GACTAACTACTGCGAAATCATTTGCCAAGGGTGTTTTCATTAATCA-AGAA 5804 Query 306 CGAAAGTTAGGGG 318 ||||| ||||||| Sbjct 5805 CGAAAATTAGGGG 5817 >seq337 Length=71803 Score = 102 bits (112), Expect = 1e-19 Identities = 156/222 (70%), Gaps = 28/222 (13%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAA 134 |||||||||||||||||| ||||| |||| |||| | ||| |||| ||||| |||| || Sbjct 10594 TTACTTTGAAAAAATTAGTGTGTTTAAAGTAGGCTATCGCTTGAATCCATTATCATGAAA 10535 Query 135 TAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAG-GACCGCCGTAATGATTAA 193 |||| ||||| | || |||||| || || ||||||| | |||||||||| Sbjct 10534 TAATGAAATAGAATGT----TTCTATCTTTTT--TTTCTAGATTTTAACTTAATGATTAA 10481 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 || ||||||| ||| | ||||||||| | || |||||||||||| Sbjct 10480 TAAGGATAGTTAGGG---------TCCAATTGTCA-AAGTAAAATTCTTGGAT------- 10438 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATT 295 || |||| ||| ||| || | |||||| |||||||| Sbjct 10437 ----AAATTACTACGATAGCATTTGCTAAGGATATTTTCATT 10400 >seq1289 Length=48306 Score = 80.6 bits (88), Expect = 5e-13 Identities = 133/190 (70%), Gaps = 18/190 (9%) Strand=Plus/Minus Query 62 GGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATA 121 |||| |||||| ||||||||||||||||| || || || | | | ||| Sbjct 31591 GGAGTTAGGACTGTTACTTTGAAAAAATTAATGTATTTAATGTA---------TTAAATC 31541 Query 122 CATTAGCATGGAATAATAGAAT-----AGGACG-TGCGGTTCTATTTTGTTGGTTTCTAG 175 |||||||||| |||||| ||| |||| | | | || | |||| ||| || || | Sbjct 31540 CATTAGCATGTAATAATGAAATACTGCAGGATGTTCCTATTTTTTTTTTTTGATTCCTGG 31481 Query 176 GACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGA 235 | |||||||||||| ||||||| || | | ||||||||||||||| | || | Sbjct 31480 ATTTTACCTAATGATTAATAAGGATAGTTGGAG--CTTAGTATTCAATTGTCA-AAGTAA 31424 Query 236 AATTCTTGGA 245 |||||||||| Sbjct 31423 AATTCTTGGA 31414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915106173696