Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq6694 369 2e-99 seq539 369 2e-99 seq95 179 2e-42 seq267 165 3e-38 seq482 136 2e-29 seq104 131 7e-28 seq947 102 3e-19 seq68 80.6 1e-12 >seq6694 Length=1050 Score = 369 bits (408), Expect = 2e-99 Identities = 267/305 (88%), Gaps = 4/305 (1%) Strand=Plus/Plus Query 380 AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAAC 439 |||||| || |||||||| | ||| || ||||||||| |||||||||||||||||||||| Sbjct 16 AGGATGTTGACGTAATGGCTTTAAACGACCCGTCTTGAAACACGGACCAAGGAGTCTAAC 75 Query 440 ATCTATGCGAGTGTTTGGGTG-TCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGG 498 || |||||||||||| ||||| | |||||| | |||||||||||||| || |||||| Sbjct 76 ATATATGCGAGTGTTAGGGTGATTAAACCCTTACGCGTAATGAAAGT-AATTTTGGTGGG 134 Query 499 AACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGC 558 ||| | | | ||||||||||||||||| ||| | || ||| ||||||||||||||| Sbjct 135 AACACTTTTG--TGCACCATCGACCGATCAGGATATTTTTTGATAGATTTGAGTAAGAGC 192 Query 559 ATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAA 618 ||| ||| | |||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 193 ATATCTGCTAGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGTCAGAGGAAA 252 Query 619 CTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGG 678 ||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||| Sbjct 253 CTCTGATGGAGGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG 312 Query 679 GGCGA 683 ||||| Sbjct 313 GGCGA 317 >seq539 Length=48646 Score = 369 bits (408), Expect = 2e-99 Identities = 267/305 (88%), Gaps = 4/305 (1%) Strand=Plus/Plus Query 380 AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAAC 439 |||||| || |||||||| | ||| || ||||||||| |||||||||||||||||||||| Sbjct 43247 AGGATGTTGACGTAATGGCTTTAAACGACCCGTCTTGAAACACGGACCAAGGAGTCTAAC 43306 Query 440 ATCTATGCGAGTGTTTGGGTG-TCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGG 498 || |||||||||||| ||||| | |||||| | |||||||||||||| || |||||| Sbjct 43307 ATATATGCGAGTGTTAGGGTGATTAAACCCTTACGCGTAATGAAAGT-AATTTTGGTGGG 43365 Query 499 AACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGC 558 ||| | | | ||||||||||||||||| ||| | || ||| ||||||||||||||| Sbjct 43366 AACACTTTTG--TGCACCATCGACCGATCAGGATATTTTTTGATAGATTTGAGTAAGAGC 43423 Query 559 ATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAA 618 ||| ||| | |||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 43424 ATATCTGCTAGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGTCAGAGGAAA 43483 Query 619 CTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGG 678 ||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||| Sbjct 43484 CTCTGATGGAGGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG 43543 Query 679 GGCGA 683 ||||| Sbjct 43544 GGCGA 43548 >seq95 Length=208494 Score = 179 bits (198), Expect = 2e-42 Identities = 120/134 (90%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 510 GTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGG 569 |||||||||||||||||| ||| | || ||| ||||||||||||||||| ||| | | Sbjct 74010 GTGCACCATCGACCGATCAGGATATTTTTTGATAGATTTGAGTAAGAGCATGTCTGCTAG 73951 Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 73950 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGTCAGAGGAAACTCTGATGGAG 73891 Query 630 GCTCGCAGCGGTTC 643 ||||| |||||||| Sbjct 73890 GCTCGTAGCGGTTC 73877 >seq267 Length=122937 Score = 165 bits (182), Expect = 3e-38 Identities = 137/164 (84%), Gaps = 4/164 (2%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| ||||||| | || ||||||| ||||||||||||||||||| |||| ||||||| Sbjct 85266 GAGTCAAGTTGTT-GCGATTGCAGCTTAAAATGGGAGGTAAATTTCTCCTAAGGCTAAAT 85324 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| || ||| |||||| ||||||| |||| ||||||||||||| |||| | || Sbjct 85325 AACGGC--GAAACCAATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTT-GAAA 85381 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTG 203 ||||||||||| || ||||||||||||||||| |||| || ||| Sbjct 85382 AGAGAGTTAAATAGTACGTGAAATTGTTGAAAAGGAAACGATTG 85425 Score = 158 bits (174), Expect = 5e-36 Identities = 111/127 (87%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 70 ATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAG 129 ||||||||||||||||| |||| |||||||| ||| ||||||| |||||| |||||| Sbjct 93929 ATGGGAGGTAAATTTCTCCTAAGGCTAAATAACGGCGAGAGACCAATAGCGAACAAGTTC 93988 Query 130 AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGA 189 |||| ||||||||||||| |||||| ||||||||||||| || ||||||||||||||| Sbjct 93989 CGTGAGGGAAAGATGAAAAGAACTTTGAAAAGAGAGTTAAATAGTACGTGAAATTGTTGA 94048 Query 190 AAGGGAA 196 ||||||| Sbjct 94049 AAGGGAA 94055 >seq482 Length=76131 Score = 136 bits (150), Expect = 2e-29 Identities = 99/113 (88%), Gaps = 4/113 (4%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||| ||||||| ||||||| ||||||| | |||||||||||| |||| Sbjct 29601 GGACCCGAAAGATGGTAAACTATGTCTGAATACGGTGAAGTC-GAGGAAACTCTGATGGA 29543 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 |||||| ||||||| ||||||||| ||||| |||||||||||||||| || Sbjct 29542 AGCTCGC---GGTTCTGACGTGCAAATTGATCGACAAATTTGGGTATAGGAGC 29493 >seq104 Length=151321 Score = 131 bits (144), Expect = 7e-28 Identities = 98/115 (85%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 59 TGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAG 118 ||||||| ||||| |||||||||||||||||| ||||||||| ||| |||||| ||||| Sbjct 64412 TGCAGCTTAAAATGAGAGGTAAATTTCTTCTAAGGCTAAATATCGGCGAGAGACTGATAG 64471 Query 119 CGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAG 173 || ||||||| |||| ||||||||||| |||||| ||||||||||||| || Sbjct 64472 CGAACAAGTACCGTGAAAAAAAGATGAAAAATACTTTGAAAAGAGAGTTAAATAG 64526 >seq947 Length=29385 Score = 102 bits (112), Expect = 3e-19 Identities = 89/107 (83%), Gaps = 4/107 (4%) Strand=Plus/Minus Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629 ||||| ||||| ||| ||||||| ||||||||||| ||| | |||||||||||| ||||| Sbjct 21855 GACCCAAAAGACGGTAAACTATGTCTGAATAGGGTTAAGTC-GAGGAAACTCTGATGGAG 21797 Query 630 GCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATA 676 ||||| |||||||| ||||||| ||||||||| || |||||| Sbjct 21796 GCTCGTAGCGGTTC--ATATGCAAATTAATCGTCAAACTT-GGTATA 21753 >seq68 Length=102597 Score = 80.6 bits (88), Expect = 1e-12 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| | ||||| |||||||||||| ||||||| ||||||||||||||||||| |||| | Sbjct 51181 TTCTAAGAGTCAAGTTGTTTGGGATTGCAGCTTAAAATGGGAGGTAAATTTCTCCTAAGG 51240 Query 94 CTAA 97 |||| Sbjct 51241 CTAA 51244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079780094600