Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq539 345 7e-93 >seq539 Length=48646 Score = 345 bits (382), Expect = 7e-93 Identities = 232/258 (90%), Gaps = 1/258 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || || | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 42106 ACTCGATGACTTCATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 42047 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||||| || | | || |||||||||||||||||| || Sbjct 42046 CCTGTTATTGCCTCAAACTTCCATCGGTTAAACACCGATAGTCCCTCTAAGAAGCTGGCG 41987 Query 122 ACC-AACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 ||| ||| || | | ||||||||||||||||||||||||||||||| |||||||| Sbjct 41986 ACCTAACAATGTTAGGCCTAGCTATTTAGCAGGTTAAGGTCTCGTTCGTTAACGGAATTA 41927 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 41926 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 41867 Query 241 AAGAGCTATCAATCTGTC 258 ||||||| |||||||||| Sbjct 41866 AAGAGCTCTCAATCTGTC 41849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796720864812