Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq539 203 3e-50 seq1417 100 3e-19 seq337 93.3 4e-17 >seq539 Length=48646 Score = 203 bits (224), Expect = 3e-50 Identities = 156/184 (85%), Gaps = 1/184 (1%) Strand=Plus/Plus Query 8 GGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACC 67 ||||| |||||||||||||||||||| ||| |||||| || ||| |||||||||| | Sbjct 41352 GGACTGTTACTTTGAAAAAATTAGAGTGTTTAAAGCAAGCTAACGCTTGAATACATTAGC 41411 Query 68 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAAT 127 |||||||||| |||||||||| || | |||||||| ||||||||||| | |||||| Sbjct 41412 ATGGAATAATGAAATAGGACGTTCGATCTTATTTTGTTGGTTTCTAGGATTG-ACGTAAT 41470 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 ||| |||| ||||||| ||||| | ||||||||||||||| |||||||||||||||||| Sbjct 41471 GATTAATAGGGATAGTTGGGGGCATTAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 41530 Query 188 TATT 191 |||| Sbjct 41531 TATT 41534 >seq1417 Length=19463 Score = 100 bits (110), Expect = 3e-19 Identities = 128/178 (72%), Gaps = 24/178 (13%) Strand=Plus/Plus Query 15 TACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCATGGAAT 74 || || |||||||||| || ||| ||||||||| | ||| |||| | Sbjct 5496 TAGTTAGAAAAAATTAAAGTGTTTAAAGCAGGCTATCGCTTGAAT--------------T 5541 Query 75 AATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAAT 134 |||| ||||| | ||||||||| |||||||||| | | |||||||| ||| Sbjct 5542 AATAAGATAGGTC--------CTATTTTGTTGGTTTCTAGGTTTGAC-GTAATGATTAAT 5592 Query 135 ACGGATAGTCGGGGGTG-TCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTATT 191 | | ||||| |||||| || |||||||||||||| |||||||| |||||||||| || Sbjct 5593 AGGAATAGTTGGGGGTCATCCGTATTCAATTGTCAGAGGTGAAAATCTTGGATTTTTT 5650 >seq337 Length=71803 Score = 93.3 bits (102), Expect = 4e-17 Identities = 125/173 (72%), Gaps = 16/173 (9%) Strand=Plus/Minus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCATGGAA 73 |||||||||||||||||| | ||| |||| |||| | ||| |||| ||||| |||| || Sbjct 10594 TTACTTTGAAAAAATTAGTGTGTTTAAAGTAGGCTATCGCTTGAATCCATTATCATGAAA 10535 Query 74 TAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAA 133 |||| ||||| | || |||||| || | ||||||| | ||||||| || Sbjct 10534 TAATGAAATAGAATGT----TTCTATCTTTT--TTTTCTAGATTTTAACTTAATGATTAA 10481 Query 134 TACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 || ||||||| ||| | ||||||||||| || |||||||||||| Sbjct 10480 TAAGGATAGTTAGGG---------TCCAATTGTCAAA-GTAAAATTCTTGGAT 10438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511949150080