Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq539 681 0.0 seq601 102 3e-19 >seq539 Length=48646 Score = 681 bits (754), Expect = 0.0 Identities = 475/532 (89%), Gaps = 10/532 (2%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| ||||| ||||||||||||||| ||||| Sbjct 45328 CTTTTATTCTACATGAGATTTCTGTTCTCAATGAGCTACCCTTAGGACACCTGTGTTATC 45269 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 45268 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACATGGATC 45209 Query 127 GGCCCGCGAAGGAC--CTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATT 184 | | | || || ||||| || || ||| | ||| |||| ||| ||| ||| Sbjct 45208 ATCAC-CTAACGATGACTTAATTCCGAAAGTTGGGCAT--AAGCCCAGCTCCACTTAATT 45152 Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG--CCGAAACGGCTCCCA 242 || |||||||||||||||||| ||||||||||||||||| || || |||| |||||| Sbjct 45151 GAATAAGTAAAAAAACGATAAAGGTAGTGGTATTTCACTGTCGTGCCTAAACA-CTCCCA 45093 Query 243 CTTATTCTACACCTCTCAA-GTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301 ||||| ||||||| ||| | ||| |||||||| ||| |||||||||||||||||||||| Sbjct 45092 CTTATCCTACACC-CTCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGG 45034 Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 45033 TCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 44974 Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 44973 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 44914 Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 44913 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 44854 Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 44853 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 44802 >seq601 Length=46931 Score = 102 bits (112), Expect = 3e-19 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 262 GTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTC 321 ||| |||||||| ||| |||||||| ||| |||||| ||||||||||||||||||| Sbjct 12825 GTCTTTTCACAATGTCAAACTAGAGTTAAGTTCAACAAAATCTTCTTTCCCCGCTGATTT 12884 Query 322 CGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 ||||||| ||||| || |||||||||||||| || ||||| Sbjct 12885 TACCAAGCCACATCCCTCGGTTGTGGTTTCGCTAGGTAATAGAT 12928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635032359296