Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq539 659 0.0 seq241 118 3e-24 seq795 114 4e-23 seq6044 109 2e-21 seq2377 100 9e-19 seq1476 100 9e-19 seq1404 100 9e-19 seq1417 89.7 2e-15 seq853 80.6 8e-13 >seq539 Length=48646 Score = 659 bits (730), Expect = 0.0 Identities = 455/510 (89%), Gaps = 6/510 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| ||| || ||||| ||| |||| |||||||||||||||||| Sbjct 41130 GTACTCATTCCAATTACGAGATCCTAAAGAACCCCGTATTGTTATTTATTGTCACTACCT 41071 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 41070 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCATCCTTGGATGTGGTAGCCGTT 41011 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||| ||| |||||| |||||||||||||| ||||||||| Sbjct 41010 TCTCAGGCTCCCTCTCCGGTGTCGTGCCCTAACACCCCGTTACCCGTTACCACCATGGTA 40951 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| |||||||||||||||||||||||||||||||||||||||||| ||||| || | Sbjct 40950 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATTCATCGTCGACG 40891 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCG---TT 297 || | ||| ||||||| |||||||||||||||||||||| | | | || || Sbjct 40890 TAAAGTCATACGATTCGAAAAGTTATTATGAATCACCAAGGGAATCGGTTGCCCGATATT 40831 Query 298 GGTTTTTTATCTAATAAATACA-CCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGC 355 |||||||||||||||||||||| |||||||| |||||||| | ||||||||||||||||| Sbjct 40830 GGTTTTTTATCTAATAAATACACCCCCTTCCAGAAGTCGGAGGTTTTAGCATGTATTAGC 40771 Query 356 TCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTT 415 ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 40770 TCTAGAATTACCACGGTTATCCAAGTAGTAAGGTACTATCAAATAAATTATAACTGATTT 40711 Query 416 AATGAGCCATTCGCAGTTTCA-CTGTATAGATTGCTTATACTTAGACATGCATGGCTTAA 474 ||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||| Sbjct 40710 AATGAGCCATTCGCAGTTTCACCTGTATAAACGATTTATACTTAGACATGCATGGCTTAA 40651 Query 475 TCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||| Sbjct 40650 TCTTTGAGACAAGCATATGACTACTGGCAG 40621 >seq241 Length=74448 Score = 118 bits (130), Expect = 3e-24 Identities = 102/124 (82%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||||| | |||||||| | |||| ||| |||||||||||||| Sbjct 66896 TACTCATTCCAATTACAAAATCCAAAAGAAATC-GTATTGTTATCTATTGTCACTACCTT 66954 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 || ||||||||||||| ||||||| ||||| || |||||||| ||| ||||||||| Sbjct 66955 CC-GTGTCGGGATTGGATAATTTGTACGCCTTTCGCAATCCTTGGAAGTGATAGCCGTTT 67013 Query 122 CTCA 125 |||| Sbjct 67014 CTCA 67017 >seq795 Length=48925 Score = 114 bits (126), Expect = 4e-23 Identities = 104/130 (80%), Gaps = 12/130 (9%) Strand=Plus/Minus Query 2 TACTCATTCCAATTACAAGACCCAAAAGA----GCCCT--GTATCAGTATTTATTGTCAC 55 |||||||||||||||||||| ||||||| | | |||| ||||||||||||| Sbjct 43125 TACTCATTCCAATTACAAGATTCAAAAGAATATGTATTTAGTATTGTTATTTATTGTCAC 43066 Query 56 TACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG 115 |||||||||||||||||||||||||||||| | |||| || ||||||||| ||| Sbjct 43065 TACCTCCCCGTGTCGGGATTGGGTAATTTG------TACTGCAATCGTTGGATGTGATAG 43012 Query 116 CCGTTTCTCA 125 | |||||||| Sbjct 43011 CTGTTTCTCA 43002 >seq6044 Length=1264 Score = 109 bits (120), Expect = 2e-21 Identities = 98/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 71 GGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTC 130 ||||| || || || ||||||||||||| |||||||| || |||||| | |||||||||| Sbjct 1020 GGATTAGGCAAGTTTCGCGCCTGCTGCCATCCTTGGACGTAGTAGCCATCTCTCAGGCTC 1079 Query 131 CCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATC 190 ||||||||||| | |||||| || |||||| ||||| || | ||||||| || | Sbjct 1080 CCTCTCCGGAACCAAACCCTGATCCCCCGTATCCCGTCTGCGCCTAGTTAGGCCATTACC 1139 Query 191 CTA 193 ||| Sbjct 1140 CTA 1142 >seq2377 Length=31618 Score = 100 bits (110), Expect = 9e-19 Identities = 55/55 (100%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 450 TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 31618 TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 31564 >seq1476 Length=18409 Score = 100 bits (110), Expect = 9e-19 Identities = 55/55 (100%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 450 TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 18409 TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 18355 >seq1404 Length=19637 Score = 100 bits (110), Expect = 9e-19 Identities = 55/55 (100%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 450 TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 55 >seq1417 Length=19463 Score = 89.7 bits (98), Expect = 2e-15 Identities = 103/136 (76%), Gaps = 6/136 (4%) Strand=Plus/Minus Query 218 ATTTGAATGAAC-CATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCAC 276 |||||||||| ||||| || | || | ||| |||||| |||||||||||||||| Sbjct 5372 ATTTGAATGATTTCATCGTCGACGTAAAGTCATAAGATTCGAAAAGTTATTATGAATCAT 5313 Query 277 CAAGGAGCCCCGAAGGGCG----TTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAG 331 |||| | || | | |||||||||||| ||||||||||||||||||| |||| Sbjct 5312 CAAGTGGAATCGGTTGCCCAATATTGGTTTTTTATTTAATAAATACACCCCTTCCAGAAG 5253 Query 332 TCGGGGTTTTTAGCAT 347 |||| ||||||||| Sbjct 5252 TCGGAAATTTTAGCAT 5237 >seq853 Length=37185 Score = 80.6 bits (88), Expect = 8e-13 Identities = 44/44 (100%), Gaps = 0/44 (0%) Strand=Plus/Plus Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 44 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510245153792