Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593135.1_202016-03- 16] 10,252 sequences; 124,731,640 total letters Query= NC_032108.1 Length=589068 Score E Sequences producing significant alignments: (Bits) Value seq1325 100 1e-15 >seq1325 Length=38325 Score = 100 bits (110), Expect = 1e-15 Identities = 166/236 (70%), Gaps = 8/236 (3%) Strand=Plus/Minus Query 12813 TACCTAGGGTCTTTCCTCTAACTTCACGGCAACCTTGAGAAGTC---TTGTTCCAAATGC 12869 |||| || |||||||| | || |||| ||| ||| |||| || ||||| | | Sbjct 36993 TACCAAGAGTCTTTCCACGAATTTCATAGCA---TTGGGAAGAAACTTTATTCCAGTTCC 36937 Query 12870 CTTGGTGTAGTTCTTTGTTTCTATCTCCAACCTGACGAGAAAGATTAATTAGT-TGTCCT 12928 |||| |||| |||| |||||| ||| || | || | ||| | || || || | | | Sbjct 36936 CTTGATGTAATTCTATGTTTCGATCACCCAATTGTCTAGACA-ATGAAATAATCTCAGCA 36878 Query 12929 ATGATGAGCTCTGCCACGCTTCTAGTGTTGCAAAAGGGAGAATTAAAGACTGCAATGCCT 12988 || || | ||||| || |||||| |||||| || |||||||| || |||||||| ||| Sbjct 36877 ATAATTAATTCTGCAACACTTCTACTGTTGCTGAATGGAGAATTGAATACTGCAATACCT 36818 Query 12989 AGTTTGGTAGCCATGTCTAGATTAACCTGATCGTAACCAATGCAGAAGCATCCTAT 13044 | |||| ||| || |||| ||| |||| ||||| ||||||||||| || Sbjct 36817 CGATTGGCAGCAGCTTCAAGATCAACTTGATTAGTTCCAATACAGAAGCATCCAAT 36762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1884638813103036