Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq2593 343 3e-92 seq59 343 3e-92 seq1043 129 1e-27 seq2119 86.0 1e-14 >seq2593 Length=26768 Score = 343 bits (380), Expect = 3e-92 Identities = 245/280 (88%), Gaps = 1/280 (0%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98 ||||| || | | ||||| |||||| ||||| |||||||||||||||||||||||| Sbjct 10898 ATGCCATTAATTTGGTGTTTCGGGGAATTTGGACTGTTACTTTGAAAAAATTAGAGTGTT 10839 Query 99 CAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158 |||||| || ||| |||||||||||||||||||||| |||||||||| || | || Sbjct 10838 TAAAGCAAGCTAACGCTTGAATACATTAGCATGGAATAATGAAATAGGACGTTCGATCCT 10779 Query 159 ATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTAT 218 ||||||||||||||||||| | |||||||||||||||||||||| ||||| | ||||| Sbjct 10778 ATTTTGTTGGTTTCTAGGATTGACGTAATGATTAATAGGGATAGTTGGGGGCATTAGTAT 10719 Query 219 TCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCA 278 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 10718 TCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCATTTG 10659 Query 279 CCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||||||||||||||||||||| |||||||||||||||| Sbjct 10658 CCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTAGGGG 10620 >seq59 Length=186741 Score = 343 bits (380), Expect = 3e-92 Identities = 245/280 (88%), Gaps = 1/280 (0%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98 ||||| || | | ||||| |||||| ||||| |||||||||||||||||||||||| Sbjct 143240 ATGCCATTAATTTGGTGTTTCGGGGAATTTGGACTGTTACTTTGAAAAAATTAGAGTGTT 143181 Query 99 CAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158 |||||| || ||| |||||||||||||||||||||| |||||||||| || | || Sbjct 143180 TAAAGCAAGCTAACGCTTGAATACATTAGCATGGAATAATGAAATAGGACGTTCGATCCT 143121 Query 159 ATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTAT 218 ||||||||||||||||||| | |||||||||||||||||||||| ||||| | ||||| Sbjct 143120 ATTTTGTTGGTTTCTAGGATTGACGTAATGATTAATAGGGATAGTTGGGGGCATTAGTAT 143061 Query 219 TCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCA 278 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 143060 TCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCATTTG 143001 Query 279 CCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||||||||||||||||||||| |||||||||||||||| Sbjct 143000 CCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTAGGGG 142962 >seq1043 Length=51406 Score = 129 bits (142), Expect = 1e-27 Identities = 167/229 (73%), Gaps = 24/229 (10%) Strand=Plus/Plus Query 68 AGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAG 127 |||||| |||||||||||||||||| ||||| |||| |||| | ||| |||| ||||| Sbjct 9172 AGGACTGTTACTTTGAAAAAATTAGTGTGTTTAAAGTAGGCTATCGCTTGAATCCATTAT 9231 Query 128 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAG-GACCGCCGTAA 186 |||| |||||| ||||||| || ||||||||| ||||||| | ||| Sbjct 9232 CATGAAATAATGAAATAGGATGT----TTCTATTTT-----TTTCTAGATTTTAACTTAA 9282 Query 187 TGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 ||||||||| ||||||| ||| | ||||| ||||||||| | || |||||||||||| Sbjct 9283 TGATTAATAAGGATAGTTAGGG--ATTAGTATCCAATTGTCA-AAGTAAAATTCTTGGAT 9339 Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATT 295 || |||| ||||| | || | |||||| |||||||| Sbjct 9340 -----------AAATTACTACGAAAACATTTGCTAAGGATATTTTCATT 9377 >seq2119 Length=17545 Score = 86.0 bits (94), Expect = 1e-14 Identities = 64/73 (88%), Gaps = 3/73 (4%) Strand=Plus/Plus Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305 ||||||| ||||||||||||||||| | || |||||||||||||||||||||| ||| Sbjct 10289 TTTATTG--GACTAACTACTGCGAAATCATTTGCCAAGGATGTTTTCATTAATCA-AGAA 10345 Query 306 CGAAAGTTAGGGG 318 ||||| ||||||| Sbjct 10346 CGAAAATTAGGGG 10358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915096866112