Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq4626 365 2e-98 seq2593 365 2e-98 seq59 187 1e-44 seq475 163 1e-37 seq3635 158 5e-36 seq651 154 6e-35 seq1726 140 1e-30 seq472 122 4e-25 seq1661 107 8e-21 seq261 80.6 1e-12 seq5504 78.8 4e-12 >seq4626 Length=3558 Score = 365 bits (404), Expect = 2e-98 Identities = 266/305 (87%), Gaps = 4/305 (1%) Strand=Plus/Minus Query 380 AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAAC 439 |||||| || |||||||| | ||| || ||||||||| |||||||||||||||||||||| Sbjct 3543 AGGATGTTGACGTAATGGCTTTAAACGACCCGTCTTGAAACACGGACCAAGGAGTCTAAC 3484 Query 440 ATCTATGCGAGTGTTTGGGTG-TCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGG 498 || |||||||||||| ||||| | |||||| | |||||||||||||| || |||||| Sbjct 3483 ATATATGCGAGTGTTAGGGTGATTAAACCCTTACGCGTAATGAAAGT-AATTTTGGTGGG 3425 Query 499 AACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGC 558 ||| | | ||||||||||||||||| ||| | || ||| ||||||||||||||| Sbjct 3424 AACATTTTTG--TGCACCATCGACCGATCAGGATATTTTTTGATAGATTTGAGTAAGAGC 3367 Query 559 ATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAA 618 ||| ||| | |||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 3366 ATATCTGCTAGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGTCAGAGGAAA 3307 Query 619 CTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGG 678 ||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||| Sbjct 3306 CTCTGATGGAGGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG 3247 Query 679 GGCGA 683 ||||| Sbjct 3246 GGCGA 3242 >seq2593 Length=26768 Score = 365 bits (404), Expect = 2e-98 Identities = 266/305 (87%), Gaps = 4/305 (1%) Strand=Plus/Minus Query 380 AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAAC 439 |||||| || |||||||| | ||| || ||||||||| |||||||||||||||||||||| Sbjct 8571 AGGATGTTGACGTAATGGCTTTAAACGACCCGTCTTGAAACACGGACCAAGGAGTCTAAC 8512 Query 440 ATCTATGCGAGTGTTTGGGTG-TCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGG 498 || |||||||||||| ||||| | |||||| | |||||||||||||| || |||||| Sbjct 8511 ATATATGCGAGTGTTAGGGTGATTAAACCCTTACGCGTAATGAAAGT-AATTTTGGTGGG 8453 Query 499 AACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGC 558 ||| | | ||||||||||||||||| ||| | || ||| ||||||||||||||| Sbjct 8452 AACATTTTTG--TGCACCATCGACCGATCAGGATATTTTTTGATAGATTTGAGTAAGAGC 8395 Query 559 ATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAA 618 ||| ||| | |||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 8394 ATATCTGCTAGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGTCAGAGGAAA 8335 Query 619 CTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGG 678 ||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||| Sbjct 8334 CTCTGATGGAGGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG 8275 Query 679 GGCGA 683 ||||| Sbjct 8274 GGCGA 8270 Score = 212 bits (234), Expect = 3e-52 Identities = 153/177 (86%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| | ||||| |||||||||||| ||||||| ||||||||||||||||||| |||| | Sbjct 9083 TTCTAAGAGTCAAGTTGTTTGGGATTGCAGCTTAAAATGGGAGGTAAATTTCTCCTAAGG 9024 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 ||||||| ||| |||||||||||||| ||||||| |||| ||||||||||||| ||| Sbjct 9023 CTAAATAACGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACT 8964 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAG 210 ||| ||||||||||||| || |||||||||||||||||||||| || ||| | |||| Sbjct 8963 TTGAAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGATTGAAGCCAG 8907 >seq59 Length=186741 Score = 187 bits (206), Expect = 1e-44 Identities = 109/113 (96%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 571 ACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGG 630 |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 140535 ACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGTCAGAGGAAACTCTGATGGAGG 140476 Query 631 CTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| |||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 140475 CTCGTAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 140423 >seq475 Length=91833 Score = 163 bits (180), Expect = 1e-37 Identities = 121/143 (85%), Gaps = 9/143 (6%) Strand=Plus/Minus Query 510 GTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGG 569 |||||||||||||||||| ||| | || ||| |||||||||||||||||| ||| | | Sbjct 86168 GTGCACCATCGACCGATCAGGATATTTTTTGATAGATTTGAGTAAGAGCATATCTGCTAG 86109 Query 570 GACCCGAAA---------GATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACT 620 ||||||||| |||||||||||||||||||||||||||||| ||||||||||| Sbjct 86108 GACCCGAAANACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGTCAGAGGAAACT 86049 Query 621 CTGGTGGAGGCTCGCAGCGGTTC 643 ||| |||||||||| |||||||| Sbjct 86048 CTGATGGAGGCTCGTAGCGGTTC 86026 >seq3635 Length=7973 Score = 158 bits (174), Expect = 5e-36 Identities = 113/130 (87%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 70 ATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAG 129 ||||||||||||||||| |||| |||||||| ||| ||||||| |||||| |||||| Sbjct 6917 ATGGGAGGTAAATTTCTCCTAAGGCTAAATAACGGCGAGAGACCAATAGCGAACAAGTTC 6976 Query 130 AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGA 189 |||| ||||||||||||| |||||| ||||||||||||| || ||||||||||||||| Sbjct 6977 CGTGAGGGAAAGATGAAAAGAACTTTGAAAAGAGAGTTAAATAGTACGTGAAATTGTTGA 7036 Query 190 AAGGGAAGCG 199 ||||||| || Sbjct 7037 AAGGGAAACG 7046 Score = 84.2 bits (92), Expect = 9e-14 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 145 AAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGC 204 ||||| |||||| ||||||||||||| || |||||||||||||||||||||| || ||| Sbjct 7053 AAAAGAACTTTGAAAAGAGAGTTAAATAGTACGTGAAATTGTTGAAAGGGAAACGATTGA 7112 Query 205 AACCAG 210 | |||| Sbjct 7113 AGCCAG 7118 >seq651 Length=192114 Score = 154 bits (170), Expect = 6e-35 Identities = 107/120 (89%), Gaps = 1/120 (1%) Strand=Plus/Plus Query 562 GCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTC 621 |||| | |||||||||||||||| ||||||| ||||||||||||||| | |||||||||| Sbjct 171844 GCTGCTAGGACCCGAAAGATGGTAAACTATGTCTGAATAGGGTGAAGTC-GAGGAAACTC 171902 Query 622 TGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 || |||| ||||| |||||||||| ||||||||| ||| |||||||||||||||||| || Sbjct 171903 TGATGGAAGCTCGTAGCGGTTCTGACGTGCAAATTGATTGTCAAATTTGGGTATAGGAGC 171962 >seq1726 Length=39587 Score = 140 bits (154), Expect = 1e-30 Identities = 143/183 (78%), Gaps = 9/183 (5%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| ||||||| | || ||||||| ||||||||||||||||||| |||| ||||||| Sbjct 37959 GAGTCAAGTTGTT-GTGATTGCAGCTTAAAATGGGAGGTAAATTTCTCCTAAGGCTAAAT 38017 Query 100 ATTGGCCAGAGACCGATAGCG-CACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 | || ||||||| |||| ||||||| |||| |||||||||||| |||||| | Sbjct 38018 AACAGCGAGAGACC---AGCGAAACAAGTACTGTGAGGAAAAGATGAAAAGAACTTTGAA 38074 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCCC 218 | ||||||| || ||||||||||||||||| ||| || ||| | |||| | | || Sbjct 38075 A----AGTTAAATAGTACGTGAAATTGTTGAAAAAGAAACGATTGAAGCCAGTCGTACCG 38130 Query 219 GCA 221 ||| Sbjct 38131 GCA 38133 >seq472 Length=119938 Score = 122 bits (134), Expect = 4e-25 Identities = 96/115 (83%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 59 TGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAG 118 ||||||| ||||| |||||||||||||||||| ||||| ||| ||| |||| | ||||| Sbjct 12508 TGCAGCTTAAAATGAGAGGTAAATTTCTTCTAAGGCTAATTATCGGCGAGAGGCTGATAG 12449 Query 119 CGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAG 173 || ||||||| |||| ||||||||||| |||||| ||||||||||||| || Sbjct 12448 CGAACAAGTACCGTGAGAAAAAGATGAAAAATACTTTGAAAAGAGAGTTAAATAG 12394 >seq1661 Length=23074 Score = 107 bits (118), Expect = 8e-21 Identities = 90/107 (84%), Gaps = 4/107 (4%) Strand=Plus/Minus Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629 ||||| ||||| ||| ||||||||||||||||||||||| | |||||||||||| ||||| Sbjct 15051 GACCCAAAAGACGGTAAACTATGCCTGAATAGGGTGAAGTC-GAGGAAACTCTGATGGAG 14993 Query 630 GCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATA 676 ||||| |||||||| || |||| ||||||||| || |||||| Sbjct 14992 GCTCGTAGCGGTTC--ATATGTAAATTAATCGTCAAACTT-GGTATA 14949 >seq261 Length=133184 Score = 80.6 bits (88), Expect = 1e-12 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| | ||||| |||||||||||| ||||||| ||||||||||||||||||| |||| | Sbjct 44319 TTCTAAGAGTCAAGTTGTTTGGGATTGCAGCTTAAAATGGGAGGTAAATTTCTCCTAAGG 44260 Query 94 CTAA 97 |||| Sbjct 44259 CTAA 44256 >seq5504 Length=2550 Score = 78.8 bits (86), Expect = 4e-12 Identities = 57/66 (86%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 138 AAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAG 197 |||||||||||| |||||| |||||||||||| || ||||||||||||| || ||||| Sbjct 1696 AAAGATGAAAAGAACTTTGAGAAGAGAGTTAAATAGTACGTGAAATTGTTAAAGGGGAAA 1637 Query 198 CGCTTG 203 || ||| Sbjct 1636 CGATTG 1631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079758279950