Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq2593 206 3e-51 seq59 206 3e-51 seq1043 123 3e-26 >seq2593 Length=26768 Score = 206 bits (228), Expect = 3e-51 Identities = 157/184 (85%), Gaps = 1/184 (1%) Strand=Plus/Minus Query 8 GGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACC 67 ||||| |||||||||||||||||||| ||| |||||| || ||| |||||||||| | Sbjct 10868 GGACTGTTACTTTGAAAAAATTAGAGTGTTTAAAGCAAGCTAACGCTTGAATACATTAGC 10809 Query 68 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAAT 127 |||||||||| |||||||||| || | ||||||||| ||||||||||| | |||||| Sbjct 10808 ATGGAATAATGAAATAGGACGTTCGATCCTATTTTGTTGGTTTCTAGGATTG-ACGTAAT 10750 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 ||| |||| ||||||| ||||| | ||||||||||||||| |||||||||||||||||| Sbjct 10749 GATTAATAGGGATAGTTGGGGGCATTAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 10690 Query 188 TATT 191 |||| Sbjct 10689 TATT 10686 >seq59 Length=186741 Score = 206 bits (228), Expect = 3e-51 Identities = 157/184 (85%), Gaps = 1/184 (1%) Strand=Plus/Minus Query 8 GGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACC 67 ||||| |||||||||||||||||||| ||| |||||| || ||| |||||||||| | Sbjct 143210 GGACTGTTACTTTGAAAAAATTAGAGTGTTTAAAGCAAGCTAACGCTTGAATACATTAGC 143151 Query 68 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAAT 127 |||||||||| |||||||||| || | ||||||||| ||||||||||| | |||||| Sbjct 143150 ATGGAATAATGAAATAGGACGTTCGATCCTATTTTGTTGGTTTCTAGGATTG-ACGTAAT 143092 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 ||| |||| ||||||| ||||| | ||||||||||||||| |||||||||||||||||| Sbjct 143091 GATTAATAGGGATAGTTGGGGGCATTAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 143032 Query 188 TATT 191 |||| Sbjct 143031 TATT 143028 >seq1043 Length=51406 Score = 123 bits (136), Expect = 3e-26 Identities = 137/180 (76%), Gaps = 12/180 (7%) Strand=Plus/Plus Query 7 AGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTAC 66 |||||| |||||||||||||||||| | ||| |||| |||| | ||| |||| ||||| Sbjct 9172 AGGACTGTTACTTTGAAAAAATTAGTGTGTTTAAAGTAGGCTATCGCTTGAATCCATTAT 9231 Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAA 126 |||| |||||| ||||||| || ||||||||| ||||||| | ||| Sbjct 9232 CATGAAATAATGAAATAGGATGT----TTCTATTTT-----TTTCTAGATTTTAACTTAA 9282 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 |||| |||| ||||||| ||| | ||||| ||||||||||| || |||||||||||| Sbjct 9283 TGATTAATAAGGATAGTTAGGG--ATTAGTATCCAATTGTCAAA-GTAAAATTCTTGGAT 9339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511944105760