Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq2593 351 2e-94 seq59 351 2e-94 >seq2593 Length=26768 Score = 351 bits (388), Expect = 2e-94 Identities = 266/311 (86%), Gaps = 2/311 (1%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCG-CTTTGGCGGGTCGCCGGCTTCTTA 78 || |||||||||||||||||||||||| ||||| | ||| ||||||| |||||||| Sbjct 10280 GAACGAGACCTTAACCTGCTAAATAGCTAGGCCTAACATTGTTAGGTCGCCAGCTTCTTA 10221 Query 79 GAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 137 ||||||||||||| | | |||||||||||||||||||||||||||||||||||||||| Sbjct 10220 GAGGGACTATCGGTGTTTAACCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 10161 Query 138 TAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGC 197 ||||||||||||||||||||||||||||||||| || || ||||||||| |||| Sbjct 10160 TAGATGTTCTGGGCCGCACGCGCGCTACACTGATGAAGTCATCGAGTTCATTTCCTTTAT 10101 Query 198 CGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTAT 257 |||||| | ||||||||||| | ||||| ||||||||||||||||||||||||| ||| Sbjct 10100 CGGAAGATATGGGTAATCTTTTGAAACTTCATCGTGCTGGGGATAGAGCATTGCAACTAT 10041 Query 258 TGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCC 317 ||||||| |||||||||| ||||||||| | |||| ||| | | |||||||||||| Sbjct 10040 TGCTCTTGAACGAGGAATCCCTAGTAAGTACAAGTCACTAGCTTGTGCTGATTACGTCCC 9981 Query 318 TGCCCTTTGTA 328 ||||||||||| Sbjct 9980 TGCCCTTTGTA 9970 >seq59 Length=186741 Score = 351 bits (388), Expect = 2e-94 Identities = 266/311 (86%), Gaps = 2/311 (1%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCG-CTTTGGCGGGTCGCCGGCTTCTTA 78 || |||||||||||||||||||||||| ||||| | ||| ||||||| |||||||| Sbjct 142622 GAACGAGACCTTAACCTGCTAAATAGCTAGGCCTAACATTGTTAGGTCGCCAGCTTCTTA 142563 Query 79 GAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 137 ||||||||||||| | | |||||||||||||||||||||||||||||||||||||||| Sbjct 142562 GAGGGACTATCGGTGTTTAACCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 142503 Query 138 TAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGC 197 ||||||||||||||||||||||||||||||||| || || ||||||||| |||| Sbjct 142502 TAGATGTTCTGGGCCGCACGCGCGCTACACTGATGAAGTCATCGAGTTCATTTCCTTTAT 142443 Query 198 CGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTAT 257 |||||| | ||||||||||| | ||||| ||||||||||||||||||||||||| ||| Sbjct 142442 CGGAAGATATGGGTAATCTTTTGAAACTTCATCGTGCTGGGGATAGAGCATTGCAACTAT 142383 Query 258 TGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCC 317 ||||||| |||||||||| ||||||||| | |||| ||| | | |||||||||||| Sbjct 142382 TGCTCTTGAACGAGGAATCCCTAGTAAGTACAAGTCACTAGCTTGTGCTGATTACGTCCC 142323 Query 318 TGCCCTTTGTA 328 ||||||||||| Sbjct 142322 TGCCCTTTGTA 142312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947093260032