Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq882 129 1e-27 seq4626 125 1e-26 seq3219 125 1e-26 seq661 125 1e-26 seq59 125 1e-26 >seq882 Length=45769 Score = 129 bits (142), Expect = 1e-27 Identities = 135/173 (78%), Gaps = 6/173 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| || || |||||| ||| || || ||| | | | Sbjct 937 GTACGAGAGGAACCGTTGA-TTCGGA-TATTTGGTTCATGCACCTATCCGACAGGATAAT 994 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 995 GGTGCGAAGCTACCATCCGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCTA 1054 Query 121 GAACGGGGTGATTCTCTCCTG---CACATCGTAGTCGGATACGAATAG-GCTT 169 ||||| | |||| | |||| | || |||| | ||| |||||| |||| Sbjct 1055 GAACGTGACGATTTTTACCTGACCTATATATTAGTTGTATAAGAATAGAGCTT 1107 >seq4626 Length=3558 Score = 125 bits (138), Expect = 1e-26 Identities = 114/141 (81%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| || || |||||| ||| || || ||| | | | Sbjct 1163 GTACGAGAGGAACCGTTGA-TTCGGA-TATTTGGTTCATGCACCTATCCGACAGGATAAT 1106 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 1105 GGTGCGAAGCTACCATCCGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCTA 1046 Query 121 GAACGGGGTGATTCTCTCCTG 141 ||||| | |||| | |||| Sbjct 1045 GAACGTGACGATTTTTACCTG 1025 >seq3219 Length=7993 Score = 125 bits (138), Expect = 1e-26 Identities = 114/141 (81%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| || || |||||| ||| || || ||| | | | Sbjct 7057 GTACGAGAGGAACCGTTGA-TTCGGA-TATTTGGTTCATGCACCTATCCGACAGGATAAT 7000 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 6999 GGTGCGAAGCTACCATCCGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCTA 6940 Query 121 GAACGGGGTGATTCTCTCCTG 141 ||||| | |||| | |||| Sbjct 6939 GAACGTGACGATTTTTACCTG 6919 >seq661 Length=37521 Score = 125 bits (138), Expect = 1e-26 Identities = 114/141 (81%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| || || |||||| ||| || || ||| | | | Sbjct 36585 GTACGAGAGGAACCGTTGA-TTCGGA-TATTTGGTTCATGCACCTATCCGACAGGATAAT 36528 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 36527 GGTGCGAAGCTACCATCCGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCTA 36468 Query 121 GAACGGGGTGATTCTCTCCTG 141 ||||| | |||| | |||| Sbjct 36467 GAACGTGACGATTTTTACCTG 36447 >seq59 Length=186741 Score = 125 bits (138), Expect = 1e-26 Identities = 114/141 (81%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| || || |||||| ||| || || ||| | | | Sbjct 138246 GTACGAGAGGAACCGTTGA-TTCGGA-TATTTGGTTCATGCACCTATCCGACAGGATAAT 138189 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 138188 GGTGCGAAGCTACCATCCGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCTA 138129 Query 121 GAACGGGGTGATTCTCTCCTG 141 ||||| | |||| | |||| Sbjct 138128 GAACGTGACGATTTTTACCTG 138108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819110569216