Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq2593 659 0.0 seq59 659 0.0 seq661 123 8e-26 seq383 118 3e-24 seq2119 93.3 1e-16 >seq2593 Length=26768 Score = 659 bits (730), Expect = 0.0 Identities = 455/510 (89%), Gaps = 6/510 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| ||| || ||||| ||| |||| |||||||||||||||||| Sbjct 11090 GTACTCATTCCAATTACGAGATCCGAAAGAACCCCGTATTGTTATTTATTGTCACTACCT 11149 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 11150 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCATCCTTGGATGTGGTAGCCGTT 11209 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||| ||| |||||| |||||||||||||| ||||||||| Sbjct 11210 TCTCAGGCTCCCTCTCCGGTGTCGTGCCCTAACACCCCGTTACCCGTTACCACCATGGTA 11269 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| |||||||||||||||||||||||||||||||||||||||||| ||||| || | Sbjct 11270 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATTCATCGTCGACG 11329 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCG---TT 297 || | ||| ||||||| |||||||||||||||||||||| | | | || || Sbjct 11330 TAAAGTCATACGATTCGAAAAGTTATTATGAATCACCAAGGGAATCGGTTGCCCGATATT 11389 Query 298 GGTTTTTTATCTAATAAATACA-CCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGC 355 |||||||||||||||||||||| |||||||| |||||||| | ||||||||||||||||| Sbjct 11390 GGTTTTTTATCTAATAAATACACCCCCTTCCAGAAGTCGGAGGTTTTAGCATGTATTAGC 11449 Query 356 TCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTT 415 ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 11450 TCTAGAATTACCACGGTTATCCAAGTAGTAAGGTACTATCAAATAAATTATAACTGATTT 11509 Query 416 AATGAGCCATTCGCAGTTTCA-CTGTATAGATTGCTTATACTTAGACATGCATGGCTTAA 474 ||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||| Sbjct 11510 AATGAGCCATTCGCAGTTTCACCTGTATAAACGATTTATACTTAGACATGCATGGCTTAA 11569 Query 475 TCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||| Sbjct 11570 TCTTTGAGACAAGCATATGACTACTGGCAG 11599 >seq59 Length=186741 Score = 659 bits (730), Expect = 0.0 Identities = 455/510 (89%), Gaps = 6/510 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| ||| || ||||| ||| |||| |||||||||||||||||| Sbjct 143432 GTACTCATTCCAATTACGAGATCCGAAAGAACCCCGTATTGTTATTTATTGTCACTACCT 143491 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 143492 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCATCCTTGGATGTGGTAGCCGTT 143551 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||| ||| |||||| |||||||||||||| ||||||||| Sbjct 143552 TCTCAGGCTCCCTCTCCGGTGTCGTGCCCTAACACCCCGTTACCCGTTACCACCATGGTA 143611 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| |||||||||||||||||||||||||||||||||||||||||| ||||| || | Sbjct 143612 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATTCATCGTCGACG 143671 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCG---TT 297 || | ||| ||||||| |||||||||||||||||||||| | | | || || Sbjct 143672 TAAAGTCATACGATTCGAAAAGTTATTATGAATCACCAAGGGAATCGGTTGCCCGATATT 143731 Query 298 GGTTTTTTATCTAATAAATACA-CCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGC 355 |||||||||||||||||||||| |||||||| |||||||| | ||||||||||||||||| Sbjct 143732 GGTTTTTTATCTAATAAATACACCCCCTTCCAGAAGTCGGAGGTTTTAGCATGTATTAGC 143791 Query 356 TCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTT 415 ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 143792 TCTAGAATTACCACGGTTATCCAAGTAGTAAGGTACTATCAAATAAATTATAACTGATTT 143851 Query 416 AATGAGCCATTCGCAGTTTCA-CTGTATAGATTGCTTATACTTAGACATGCATGGCTTAA 474 ||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||| Sbjct 143852 AATGAGCCATTCGCAGTTTCACCTGTATAAACGATTTATACTTAGACATGCATGGCTTAA 143911 Query 475 TCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||| Sbjct 143912 TCTTTGAGACAAGCATATGACTACTGGCAG 143941 >seq661 Length=37521 Score = 123 bits (136), Expect = 8e-26 Identities = 106/130 (82%), Gaps = 6/130 (5%) Strand=Plus/Minus Query 2 TACTCATTCCAATTACAAGACCCAAAAGA----GCCCTG--TATCAGTATTTATTGTCAC 55 |||||||||||||||||||| ||||||| | | ||| ||||||||||||| Sbjct 30539 TACTCATTCCAATTACAAGATTCAAAAGAATATGTATTTAATATTGTTATTTATTGTCAC 30480 Query 56 TACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG 115 |||||||| ||||| ||||||||||||||| ||| ||||||| || ||||||||| ||| Sbjct 30479 TACCTCCCTGTGTCAGGATTGGGTAATTTGTGCGTCTGCTGCAATCGTTGGATGTGATAG 30420 Query 116 CCGTTTCTCA 125 | |||||||| Sbjct 30419 CTGTTTCTCA 30410 >seq383 Length=50203 Score = 118 bits (130), Expect = 3e-24 Identities = 102/124 (82%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||||| | |||||||| | |||| ||| |||||||||||||| Sbjct 21104 TACTCATTCCAATTACAAAATCCAAAAGAAATC-GTATTGTTATCTATTGTCACTACCTT 21162 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 || ||||||||||||| ||||||| ||||| || |||||||| ||| ||||||||| Sbjct 21163 CC-GTGTCGGGATTGGATAATTTGTACGCCTTTCGCAATCCTTGGAAGTGATAGCCGTTT 21221 Query 122 CTCA 125 |||| Sbjct 21222 CTCA 21225 Score = 100 bits (110), Expect = 9e-19 Identities = 55/55 (100%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 450 TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 50203 TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 50149 >seq2119 Length=17545 Score = 93.3 bits (102), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 6/136 (4%) Strand=Plus/Minus Query 218 ATTTGAATGAAC-CATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCAC 276 |||||||||| ||||| || | || | ||| |||||| |||||||||||||||| Sbjct 9940 ATTTGAATGATTTCATCGTCGACGTAAAGTCATAAGATTCGAAAAGTTATTATGAATCAT 9881 Query 277 CAAGGAGCCCCGAAGGGCG----TTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAG 331 |||| | || | | |||||||||||||||||||||||||||||||| |||| Sbjct 9880 CAAGTGGAATCGGTTGCCCAATATTGGTTTTTTATCTAATAAATACACCCCTTCCAGAAG 9821 Query 332 TCGGGGTTTTTAGCAT 347 |||| ||||||||| Sbjct 9820 TCGGAAATTTTAGCAT 9805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510229793024