Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593145.1_202016-03- 16] 11,269 sequences; 138,327,084 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2 149 5e-31 seq1915 89.7 4e-13 >seq2 Length=211661 Score = 149 bits (164), Expect = 5e-31 Identities = 232/331 (70%), Gaps = 3/331 (1%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||||||||| |||||||| || ||||| || ||||| || || | Sbjct 205580 ATCTGGCAAATGTACAAAAAGGCCGAAGCTTCATTTTGGACTGTTGAGGAAGTTGACCTT 205521 Query 61147 TCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTC---ATTAAA 61203 ||||| || |||||||| |||||| | | | || |||| || | ||| ||| Sbjct 205520 TCCAAGGATATGAATGATTGGGAGTATAAACTTAACGATGAAGAAAAATTCTTTATTTCT 205461 Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 || || ||||| |||||||| || ||||| ||||| |||||||| |||||| |||||||| Sbjct 205460 CACGTTTTGGCCTTCTTTGCAGCCTCGGATGGTATTGTCAATGAAAATTTAGTGGAACGT 205401 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 || | || || ||| | | || || | ||||| || || || ||||| || Sbjct 205400 TTTAGTAATGAAGTCCAAATTCCAGAAGCAAGATGTTTTTATGGATTTCAGATCATGATC 205341 Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCG 61383 || ||| |||| || || |||||| | | || ||| | || |||| ||||| | Sbjct 205340 GAAAATATCCATTCAGAAATGTACTCCCTCTTGATTGATTCTTATATCAAGGAGCCATCT 205281 Query 61384 GAACGTGAACGATTGTTCAATGCCATCGAGA 61414 || | ||| | ||| ||||||| |||| Sbjct 205280 CAAAGAGAATACCTATTCGATGCCATTGAGA 205250 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 61435 AAAGCGGATTGGGC-CTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATT 61493 |||||||||||||| |||| || |||| || || || |||||| |||||| | Sbjct 205150 AAAGCGGATTGGGCTCTTCGAT-GGATTTCCGATAAGGAATCTTCATTTGCTGAACGTCT 205092 Query 61494 GCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTG 61553 | || ||||| | || || || |||| || |||| | || || |||||||||| Sbjct 205091 TGTAGCGTTTGCCGCTGTTGAAGGAATATTCTTTTCTGGAGCTTTCGCGTCAATCTTTTG 205032 Query 61554 GTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGA 61613 ||| |||||| | ||| | ||||| || | || || ||| || | || || || || Sbjct 205031 GTTAAAGAAAAGAGGAATGATGCCAGGATTAACTTTTTCCAACGAACTAATTTCTCGAGA 204972 Query 61614 CGAGGGCATGCATTGTGATTTTGC 61637 || || |||||||||||||||| Sbjct 204971 TGAAGGATTGCATTGTGATTTTGC 204948 >seq1915 Length=14346 Score = 89.7 bits (98), Expect = 4e-13 Identities = 198/297 (67%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 |||||| ||||| | | ||| || || || || | ||| ||||| || || || | Sbjct 10544 CATAAAAAGATCCGAAACCCAAAGTGCATAAAATAAATCCCGTGCACGAACTTCTTCTTT 10603 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 || |||||| || || | || ||||| ||||| | |||||| | ||| | || Sbjct 10604 TCCAGTATTTTTTTTTAAATCCATAAAATCAAAAATGTCAGGATGCCACGTTTCTAAATA 10663 Query 66460 GATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTT 66519 || || |||| |||| ||||||| || ||||| || || || | |||| ||| || Sbjct 10664 AATAGCAAACGCGCCCGGACGTTTGTTTCCTCCTTGATCAACATATCTAGCGGTATTATT 10723 Query 66520 GAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGA 66579 | || || ||||| || | | || || || | ||||| || || | || || Sbjct 10724 ATAAACGCGTAACATAGGAATAATTCCATTTGAATAACCATTTGTTCCAGCAATATAAGA 10783 Query 66580 TCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGAT 66636 |||| || || || | |||| |||| |||||||||||| || ||||| || || Sbjct 10784 TCCTGTCGCACGAATGTTATGAATGTTCACACCAATACCACCTGCAGTCTTAGAAAT 10840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397513397638160