Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq3303 250 4e-64 seq1881 250 4e-64 seq1347 250 4e-64 seq896 250 4e-64 seq500 250 4e-64 seq346 250 4e-64 seq301 250 4e-64 seq58 250 4e-64 >seq3303 Length=4879 Score = 250 bits (276), Expect = 4e-64 Identities = 195/229 (85%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| | | |||| | ||||| | ||||||||| ||| | Sbjct 4484 GTACAAAGGGCAGGGACGTAATCAGCACAAGCTAG-TGACTTGTACTTACTAGGGATT-C 4427 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| |||| ||| | |||||||| |||||||||| ||||||||| ||||||| |||| Sbjct 4426 CTCGTTCAAGAGCAATAGTTGCAATGCTCTATCCCCAGCACGATGAAGTTTCAAAAGATT 4367 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | || || |||| || ||||| ||| | ||||||||||||||||||||| Sbjct 4366 ACCCATATCTTCCGATAAAGGAAATGAACTCGATGACTTCATCAGTGTAGCGCGCGTGCG 4307 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4306 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 4258 >seq1881 Length=13602 Score = 250 bits (276), Expect = 4e-64 Identities = 195/229 (85%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| | | |||| | ||||| | ||||||||| ||| | Sbjct 396 GTACAAAGGGCAGGGACGTAATCAGCACAAGCTAG-TGACTTGTACTTACTAGGGATT-C 453 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| |||| ||| | |||||||| |||||||||| ||||||||| ||||||| |||| Sbjct 454 CTCGTTCAAGAGCAATAGTTGCAATGCTCTATCCCCAGCACGATGAAGTTTCAAAAGATT 513 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | || || |||| || ||||| ||| | ||||||||||||||||||||| Sbjct 514 ACCCATATCTTCCGATAAAGGAAATGAACTCGATGACTTCATCAGTGTAGCGCGCGTGCG 573 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 574 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 622 >seq1347 Length=32214 Score = 250 bits (276), Expect = 4e-64 Identities = 195/229 (85%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| | | |||| | ||||| | ||||||||| ||| | Sbjct 12468 GTACAAAGGGCAGGGACGTAATCAGCACAAGCTAG-TGACTTGTACTTACTAGGGATT-C 12525 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| |||| ||| | |||||||| |||||||||| ||||||||| ||||||| |||| Sbjct 12526 CTCGTTCAAGAGCAATAGTTGCAATGCTCTATCCCCAGCACGATGAAGTTTCAAAAGATT 12585 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | || || |||| || ||||| ||| | ||||||||||||||||||||| Sbjct 12586 ACCCATATCTTCCGATAAAGGAAATGAACTCGATGACTTCATCAGTGTAGCGCGCGTGCG 12645 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12646 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 12694 Score = 250 bits (276), Expect = 4e-64 Identities = 195/229 (85%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| | | |||| | ||||| | ||||||||| ||| | Sbjct 31819 GTACAAAGGGCAGGGACGTAATCAGCACAAGCTAG-TGACTTGTACTTACTAGGGATT-C 31762 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| |||| ||| | |||||||| |||||||||| ||||||||| ||||||| |||| Sbjct 31761 CTCGTTCAAGAGCAATAGTTGCAATGCTCTATCCCCAGCACGATGAAGTTTCAAAAGATT 31702 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | || || |||| || ||||| ||| | ||||||||||||||||||||| Sbjct 31701 ACCCATATCTTCCGATAAAGGAAATGAACTCGATGACTTCATCAGTGTAGCGCGCGTGCG 31642 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 31641 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 31593 >seq896 Length=46539 Score = 250 bits (276), Expect = 4e-64 Identities = 195/229 (85%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| | | |||| | ||||| | ||||||||| ||| | Sbjct 46144 GTACAAAGGGCAGGGACGTAATCAGCACAAGCTAG-TGACTTGTACTTACTAGGGATT-C 46087 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| |||| ||| | |||||||| |||||||||| ||||||||| ||||||| |||| Sbjct 46086 CTCGTTCAAGAGCAATAGTTGCAATGCTCTATCCCCAGCACGATGAAGTTTCAAAAGATT 46027 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | || || |||| || ||||| ||| | ||||||||||||||||||||| Sbjct 46026 ACCCATATCTTCCGATAAAGGAAATGAACTCGATGACTTCATCAGTGTAGCGCGCGTGCG 45967 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 45966 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 45918 >seq500 Length=39404 Score = 250 bits (276), Expect = 4e-64 Identities = 195/229 (85%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| | | |||| | ||||| | ||||||||| ||| | Sbjct 396 GTACAAAGGGCAGGGACGTAATCAGCACAAGCTAG-TGACTTGTACTTACTAGGGATT-C 453 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| |||| ||| | |||||||| |||||||||| ||||||||| ||||||| |||| Sbjct 454 CTCGTTCAAGAGCAATAGTTGCAATGCTCTATCCCCAGCACGATGAAGTTTCAAAAGATT 513 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | || || |||| || ||||| ||| | ||||||||||||||||||||| Sbjct 514 ACCCATATCTTCCGATAAAGGAAATGAACTCGATGACTTCATCAGTGTAGCGCGCGTGCG 573 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 574 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 622 >seq346 Length=59818 Score = 250 bits (276), Expect = 4e-64 Identities = 195/229 (85%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| | | |||| | ||||| | ||||||||| ||| | Sbjct 59423 GTACAAAGGGCAGGGACGTAATCAGCACAAGCTAG-TGACTTGTACTTACTAGGGATT-C 59366 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| |||| ||| | |||||||| |||||||||| ||||||||| ||||||| |||| Sbjct 59365 CTCGTTCAAGAGCAATAGTTGCAATGCTCTATCCCCAGCACGATGAAGTTTCAAAAGATT 59306 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | || || |||| || ||||| ||| | ||||||||||||||||||||| Sbjct 59305 ACCCATATCTTCCGATAAAGGAAATGAACTCGATGACTTCATCAGTGTAGCGCGCGTGCG 59246 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 59245 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 59197 >seq301 Length=175246 Score = 250 bits (276), Expect = 4e-64 Identities = 195/229 (85%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| | | |||| | ||||| | ||||||||| ||| | Sbjct 48352 GTACAAAGGGCAGGGACGTAATCAGCACAAGCTAG-TGACTTGTACTTACTAGGGATT-C 48295 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| |||| ||| | |||||||| |||||||||| ||||||||| ||||||| |||| Sbjct 48294 CTCGTTCAAGAGCAATAGTTGCAATGCTCTATCCCCAGCACGATGAAGTTTCAAAAGATT 48235 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | || || |||| || ||||| ||| | ||||||||||||||||||||| Sbjct 48234 ACCCATATCTTCCGATAAAGGAAATGAACTCGATGACTTCATCAGTGTAGCGCGCGTGCG 48175 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 48174 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 48126 >seq58 Length=135075 Score = 250 bits (276), Expect = 4e-64 Identities = 195/229 (85%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| | | |||| | ||||| | ||||||||| ||| | Sbjct 396 GTACAAAGGGCAGGGACGTAATCAGCACAAGCTAG-TGACTTGTACTTACTAGGGATT-C 453 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| |||| ||| | |||||||| |||||||||| ||||||||| ||||||| |||| Sbjct 454 CTCGTTCAAGAGCAATAGTTGCAATGCTCTATCCCCAGCACGATGAAGTTTCAAAAGATT 513 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | || || |||| || ||||| ||| | ||||||||||||||||||||| Sbjct 514 ACCCATATCTTCCGATAAAGGAAATGAACTCGATGACTTCATCAGTGTAGCGCGCGTGCG 573 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 574 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751921795525