Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq301 369 2e-99 seq65 183 1e-43 seq475 167 1e-38 seq19 158 5e-36 seq493 141 4e-31 seq4 131 7e-28 >seq301 Length=175246 Score = 369 bits (408), Expect = 2e-99 Identities = 267/305 (88%), Gaps = 4/305 (1%) Strand=Plus/Plus Query 380 AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAAC 439 |||||| || |||||||| | ||| || ||||||||| |||||||||||||||||||||| Sbjct 49753 AGGATGTTGACGTAATGGCTTTAAACGACCCGTCTTGAAACACGGACCAAGGAGTCTAAC 49812 Query 440 ATCTATGCGAGTGTTTGGGTG-TCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGG 498 || |||||||||||| ||||| | |||||| | |||||||||||||| || |||||| Sbjct 49813 ATATATGCGAGTGTTAGGGTGATTAAACCCTTACGCGTAATGAAAGT-AATTTTGGTGGG 49871 Query 499 AACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGC 558 ||| | | | ||||||||||||||||| ||| | || ||| ||||||||||||||| Sbjct 49872 AACACTTTTG--TGCACCATCGACCGATCAGGATATTTTTTGATAGATTTGAGTAAGAGC 49929 Query 559 ATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAA 618 ||| ||| | |||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 49930 ATATCTGCTAGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGTCAGAGGAAA 49989 Query 619 CTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGG 678 ||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||| Sbjct 49990 CTCTGATGGAGGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG 50049 Query 679 GGCGA 683 ||||| Sbjct 50050 GGCGA 50054 >seq65 Length=84944 Score = 183 bits (202), Expect = 1e-43 Identities = 121/134 (90%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 510 GTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGG 569 |||||||||||||||||| ||| | || ||| |||||||||||||||||| ||| | | Sbjct 61470 GTGCACCATCGACCGATCAGGATATTTTTTGATAGATTTGAGTAAGAGCATATCTGCTAG 61529 Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 61530 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGTCAGAGGAAACTCTGATGGAG 61589 Query 630 GCTCGCAGCGGTTC 643 ||||| |||||||| Sbjct 61590 GCTCGTAGCGGTTC 61603 >seq475 Length=47638 Score = 167 bits (184), Expect = 1e-38 Identities = 141/172 (82%), Gaps = 5/172 (3%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAA-TTTCTTCTAAAGCTAAA 98 ||||| ||||||||| || || |||| |||||||||||||| ||||| |||| |||||| Sbjct 23727 GAGTCAAGTTGTTTGTGATTGTAGCTTAAAATGGGAGGTAAAATTTCTCCTAAGGCTAAA 23786 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || | || |||||||||||||| |||||| |||| ||||||||||||| |||||| | Sbjct 23787 TAATAGCGAGAGACCGATAGCGAGCAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAA 23846 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAG 210 | ||||||| ||| |||||||||||||||||||| || ||| | |||| Sbjct 23847 A----AGTTAAATAGCGCGTGAAATTGTTGAAAGGGATACGATTGAAGCCAG 23894 Score = 159 bits (176), Expect = 1e-36 Identities = 120/141 (85%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 70 ATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAG 129 ||||||||||||||||| |||| |||||||| ||| ||||||| |||||| |||||| Sbjct 32392 ATGGGAGGTAAATTTCTCCTAAGGCTAAATAACGGCGAGAGACCAATAGCGAACAAGTTC 32451 Query 130 AGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGA 189 |||| ||||||||||||| |||||| ||||||||||||| || ||||||||||||||| Sbjct 32452 CGTGAGGGAAAGATGAAAAGAACTTTGAAAAGAGAGTTAAATAGTACGTGAAATTGTTGA 32511 Query 190 AAGGGAAGCGCTTGCAACCAG 210 ||||||| | ||| | |||| Sbjct 32512 AAGGGAAATGATTGAAGCCAG 32532 >seq19 Length=144130 Score = 158 bits (174), Expect = 5e-36 Identities = 106/117 (91%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 |||||||||||||||||||| ||||||| ||||||||||||||| | |||||||||||| Sbjct 73467 GTTGGGACCCGAAAGATGGTAAACTATGTCTGAATAGGGTGAAGTC-GAGGAAACTCTGA 73409 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 |||| ||||| |||||||||| ||||||||| ||||| |||||||||||||||| || Sbjct 73408 TGGAAGCTCGTAGCGGTTCTGACGTGCAAATTGATCGACAAATTTGGGTATAGGAGC 73352 >seq493 Length=46342 Score = 141 bits (156), Expect = 4e-31 Identities = 122/148 (82%), Gaps = 6/148 (4%) Strand=Plus/Plus Query 473 GCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGAT 532 ||||||||||||| || ||||||||| | | | ||||||||||||||||| ||| Sbjct 15503 GCGTAATGAAAGT-AATTTTGGTGGGAACACTTTTG--TGCACCATCGACCGATCAGGAT 15559 Query 533 GTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATG 592 | || ||| |||||||||||||||||| ||| | |||||||||||||||||||||||| Sbjct 15560 ATTTTTTGATAGATTTGAGTAAGAGCATATCTGATAGGACCCGAAAGATGGTGAACTATG 15619 Query 593 CCTGAATAGGGTGAAGCCAGAGGAAACT 620 |||||||||||||| | || |||||| Sbjct 15620 CCTGAATAGGGTGATG---GATGAAACT 15644 >seq4 Length=164413 Score = 131 bits (144), Expect = 7e-28 Identities = 98/115 (85%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 59 TGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAG 118 ||||||| ||||| |||||||||||||||||| ||||||||| ||| |||||| ||||| Sbjct 56789 TGCAGCTTAAAATGAGAGGTAAATTTCTTCTAAGGCTAAATATCGGCGAGAGACTGATAG 56730 Query 119 CGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAG 173 || ||||||| |||| ||||||||||| |||||| ||||||||||||| || Sbjct 56729 CGAACAAGTACCGTGAAAAAAAGATGAAAAATACTTTGAAAAGAGAGTTAAATAG 56675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079769734250