Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq3303 136 5e-30 seq1881 136 5e-30 seq1347 136 5e-30 seq896 136 5e-30 seq500 136 5e-30 seq346 136 5e-30 seq301 136 5e-30 seq58 136 5e-30 >seq3303 Length=4879 Score = 136 bits (150), Expect = 5e-30 Identities = 108/127 (85%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||||||||||||| | || |||||||||| |||||||||||||||||||||| Sbjct 3691 CTAGAAACCAACAAAATAAGATCGAACGTCCTATTTCATTATTCCATGCTAATGTATTCA 3632 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGC- 124 |||| ||| |||||| |||||||||||||| |||| |||| ||||| |||| |||| Sbjct 3631 AGCGTTAGCTTGCTTTAAACACTCTAATTTTTTCAAAGTAACAGTCCAAATTCC-CCGCA 3573 Query 125 ACACCAA 131 ||||||| Sbjct 3572 ACACCAA 3566 >seq1881 Length=13602 Score = 136 bits (150), Expect = 5e-30 Identities = 108/127 (85%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||||||||||||| | || |||||||||| |||||||||||||||||||||| Sbjct 1189 CTAGAAACCAACAAAATAAGATCGAACGTCCTATTTCATTATTCCATGCTAATGTATTCA 1248 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGC- 124 |||| ||| |||||| |||||||||||||| |||| |||| ||||| |||| |||| Sbjct 1249 AGCGTTAGCTTGCTTTAAACACTCTAATTTTTTCAAAGTAACAGTCCAAATTCC-CCGCA 1307 Query 125 ACACCAA 131 ||||||| Sbjct 1308 ACACCAA 1314 >seq1347 Length=32214 Score = 136 bits (150), Expect = 5e-30 Identities = 108/127 (85%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||||||||||||| | || |||||||||| |||||||||||||||||||||| Sbjct 13261 CTAGAAACCAACAAAATAAGATCGAACGTCCTATTTCATTATTCCATGCTAATGTATTCA 13320 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGC- 124 |||| ||| |||||| |||||||||||||| |||| |||| ||||| |||| |||| Sbjct 13321 AGCGTTAGCTTGCTTTAAACACTCTAATTTTTTCAAAGTAACAGTCCAAATTCC-CCGCA 13379 Query 125 ACACCAA 131 ||||||| Sbjct 13380 ACACCAA 13386 Score = 136 bits (150), Expect = 5e-30 Identities = 108/127 (85%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||||||||||||| | || |||||||||| |||||||||||||||||||||| Sbjct 31026 CTAGAAACCAACAAAATAAGATCGAACGTCCTATTTCATTATTCCATGCTAATGTATTCA 30967 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGC- 124 |||| ||| |||||| |||||||||||||| |||| |||| ||||| |||| |||| Sbjct 30966 AGCGTTAGCTTGCTTTAAACACTCTAATTTTTTCAAAGTAACAGTCCAAATTCC-CCGCA 30908 Query 125 ACACCAA 131 ||||||| Sbjct 30907 ACACCAA 30901 >seq896 Length=46539 Score = 136 bits (150), Expect = 5e-30 Identities = 108/127 (85%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||||||||||||| | || |||||||||| |||||||||||||||||||||| Sbjct 45351 CTAGAAACCAACAAAATAAGATCGAACGTCCTATTTCATTATTCCATGCTAATGTATTCA 45292 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGC- 124 |||| ||| |||||| |||||||||||||| |||| |||| ||||| |||| |||| Sbjct 45291 AGCGTTAGCTTGCTTTAAACACTCTAATTTTTTCAAAGTAACAGTCCAAATTCC-CCGCA 45233 Query 125 ACACCAA 131 ||||||| Sbjct 45232 ACACCAA 45226 >seq500 Length=39404 Score = 136 bits (150), Expect = 5e-30 Identities = 108/127 (85%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||||||||||||| | || |||||||||| |||||||||||||||||||||| Sbjct 1189 CTAGAAACCAACAAAATAAGATCGAACGTCCTATTTCATTATTCCATGCTAATGTATTCA 1248 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGC- 124 |||| ||| |||||| |||||||||||||| |||| |||| ||||| |||| |||| Sbjct 1249 AGCGTTAGCTTGCTTTAAACACTCTAATTTTTTCAAAGTAACAGTCCAAATTCC-CCGCA 1307 Query 125 ACACCAA 131 ||||||| Sbjct 1308 ACACCAA 1314 >seq346 Length=59818 Score = 136 bits (150), Expect = 5e-30 Identities = 108/127 (85%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||||||||||||| | || |||||||||| |||||||||||||||||||||| Sbjct 58630 CTAGAAACCAACAAAATAAGATCGAACGTCCTATTTCATTATTCCATGCTAATGTATTCA 58571 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGC- 124 |||| ||| |||||| |||||||||||||| |||| |||| ||||| |||| |||| Sbjct 58570 AGCGTTAGCTTGCTTTAAACACTCTAATTTTTTCAAAGTAACAGTCCAAATTCC-CCGCA 58512 Query 125 ACACCAA 131 ||||||| Sbjct 58511 ACACCAA 58505 >seq301 Length=175246 Score = 136 bits (150), Expect = 5e-30 Identities = 108/127 (85%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||||||||||||| | || |||||||||| |||||||||||||||||||||| Sbjct 47559 CTAGAAACCAACAAAATAAGATCGAACGTCCTATTTCATTATTCCATGCTAATGTATTCA 47500 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGC- 124 |||| ||| |||||| |||||||||||||| |||| |||| ||||| |||| |||| Sbjct 47499 AGCGTTAGCTTGCTTTAAACACTCTAATTTTTTCAAAGTAACAGTCCAAATTCC-CCGCA 47441 Query 125 ACACCAA 131 ||||||| Sbjct 47440 ACACCAA 47434 >seq58 Length=135075 Score = 136 bits (150), Expect = 5e-30 Identities = 108/127 (85%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||||||||||||| | || |||||||||| |||||||||||||||||||||| Sbjct 1189 CTAGAAACCAACAAAATAAGATCGAACGTCCTATTTCATTATTCCATGCTAATGTATTCA 1248 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGC- 124 |||| ||| |||||| |||||||||||||| |||| |||| ||||| |||| |||| Sbjct 1249 AGCGTTAGCTTGCTTTAAACACTCTAATTTTTTCAAAGTAACAGTCCAAATTCC-CCGCA 1307 Query 125 ACACCAA 131 ||||||| Sbjct 1308 ACACCAA 1314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595138101990