Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq3303 203 3e-50 seq1881 203 3e-50 seq1347 203 3e-50 seq896 203 3e-50 seq500 203 3e-50 seq346 203 3e-50 seq301 203 3e-50 seq58 203 3e-50 seq1362 113 5e-23 seq667 100 3e-19 >seq3303 Length=4879 Score = 203 bits (224), Expect = 3e-50 Identities = 156/184 (85%), Gaps = 1/184 (1%) Strand=Plus/Plus Query 8 GGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACC 67 ||||| |||||||||||||||||||| ||| |||||| || ||| |||||||||| | Sbjct 3585 GGACTGTTACTTTGAAAAAATTAGAGTGTTTAAAGCAAGCTAACGCTTGAATACATTAGC 3644 Query 68 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAAT 127 |||||||||| |||||||||| || | |||||||| ||||||||||| | |||||| Sbjct 3645 ATGGAATAATGAAATAGGACGTTCGATCTTATTTTGTTGGTTTCTAGGATTG-ACGTAAT 3703 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 ||| |||| ||||||| ||||| | ||||||||||||||| |||||||||||||||||| Sbjct 3704 GATTAATAGGGATAGTTGGGGGCATTAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 3763 Query 188 TATT 191 |||| Sbjct 3764 TATT 3767 >seq1881 Length=13602 Score = 203 bits (224), Expect = 3e-50 Identities = 156/184 (85%), Gaps = 1/184 (1%) Strand=Plus/Minus Query 8 GGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACC 67 ||||| |||||||||||||||||||| ||| |||||| || ||| |||||||||| | Sbjct 1295 GGACTGTTACTTTGAAAAAATTAGAGTGTTTAAAGCAAGCTAACGCTTGAATACATTAGC 1236 Query 68 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAAT 127 |||||||||| |||||||||| || | |||||||| ||||||||||| | |||||| Sbjct 1235 ATGGAATAATGAAATAGGACGTTCGATCTTATTTTGTTGGTTTCTAGGATTG-ACGTAAT 1177 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 ||| |||| ||||||| ||||| | ||||||||||||||| |||||||||||||||||| Sbjct 1176 GATTAATAGGGATAGTTGGGGGCATTAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 1117 Query 188 TATT 191 |||| Sbjct 1116 TATT 1113 >seq1347 Length=32214 Score = 203 bits (224), Expect = 3e-50 Identities = 156/184 (85%), Gaps = 1/184 (1%) Strand=Plus/Minus Query 8 GGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACC 67 ||||| |||||||||||||||||||| ||| |||||| || ||| |||||||||| | Sbjct 13367 GGACTGTTACTTTGAAAAAATTAGAGTGTTTAAAGCAAGCTAACGCTTGAATACATTAGC 13308 Query 68 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAAT 127 |||||||||| |||||||||| || | |||||||| ||||||||||| | |||||| Sbjct 13307 ATGGAATAATGAAATAGGACGTTCGATCTTATTTTGTTGGTTTCTAGGATTG-ACGTAAT 13249 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 ||| |||| ||||||| ||||| | ||||||||||||||| |||||||||||||||||| Sbjct 13248 GATTAATAGGGATAGTTGGGGGCATTAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 13189 Query 188 TATT 191 |||| Sbjct 13188 TATT 13185 Score = 203 bits (224), Expect = 3e-50 Identities = 156/184 (85%), Gaps = 1/184 (1%) Strand=Plus/Plus Query 8 GGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACC 67 ||||| |||||||||||||||||||| ||| |||||| || ||| |||||||||| | Sbjct 30920 GGACTGTTACTTTGAAAAAATTAGAGTGTTTAAAGCAAGCTAACGCTTGAATACATTAGC 30979 Query 68 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAAT 127 |||||||||| |||||||||| || | |||||||| ||||||||||| | |||||| Sbjct 30980 ATGGAATAATGAAATAGGACGTTCGATCTTATTTTGTTGGTTTCTAGGATTG-ACGTAAT 31038 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 ||| |||| ||||||| ||||| | ||||||||||||||| |||||||||||||||||| Sbjct 31039 GATTAATAGGGATAGTTGGGGGCATTAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 31098 Query 188 TATT 191 |||| Sbjct 31099 TATT 31102 >seq896 Length=46539 Score = 203 bits (224), Expect = 3e-50 Identities = 156/184 (85%), Gaps = 1/184 (1%) Strand=Plus/Plus Query 8 GGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACC 67 ||||| |||||||||||||||||||| ||| |||||| || ||| |||||||||| | Sbjct 45245 GGACTGTTACTTTGAAAAAATTAGAGTGTTTAAAGCAAGCTAACGCTTGAATACATTAGC 45304 Query 68 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAAT 127 |||||||||| |||||||||| || | |||||||| ||||||||||| | |||||| Sbjct 45305 ATGGAATAATGAAATAGGACGTTCGATCTTATTTTGTTGGTTTCTAGGATTG-ACGTAAT 45363 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 ||| |||| ||||||| ||||| | ||||||||||||||| |||||||||||||||||| Sbjct 45364 GATTAATAGGGATAGTTGGGGGCATTAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 45423 Query 188 TATT 191 |||| Sbjct 45424 TATT 45427 >seq500 Length=39404 Score = 203 bits (224), Expect = 3e-50 Identities = 156/184 (85%), Gaps = 1/184 (1%) Strand=Plus/Minus Query 8 GGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACC 67 ||||| |||||||||||||||||||| ||| |||||| || ||| |||||||||| | Sbjct 1295 GGACTGTTACTTTGAAAAAATTAGAGTGTTTAAAGCAAGCTAACGCTTGAATACATTAGC 1236 Query 68 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAAT 127 |||||||||| |||||||||| || | |||||||| ||||||||||| | |||||| Sbjct 1235 ATGGAATAATGAAATAGGACGTTCGATCTTATTTTGTTGGTTTCTAGGATTG-ACGTAAT 1177 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 ||| |||| ||||||| ||||| | ||||||||||||||| |||||||||||||||||| Sbjct 1176 GATTAATAGGGATAGTTGGGGGCATTAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 1117 Query 188 TATT 191 |||| Sbjct 1116 TATT 1113 >seq346 Length=59818 Score = 203 bits (224), Expect = 3e-50 Identities = 156/184 (85%), Gaps = 1/184 (1%) Strand=Plus/Plus Query 8 GGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACC 67 ||||| |||||||||||||||||||| ||| |||||| || ||| |||||||||| | Sbjct 58524 GGACTGTTACTTTGAAAAAATTAGAGTGTTTAAAGCAAGCTAACGCTTGAATACATTAGC 58583 Query 68 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAAT 127 |||||||||| |||||||||| || | |||||||| ||||||||||| | |||||| Sbjct 58584 ATGGAATAATGAAATAGGACGTTCGATCTTATTTTGTTGGTTTCTAGGATTG-ACGTAAT 58642 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 ||| |||| ||||||| ||||| | ||||||||||||||| |||||||||||||||||| Sbjct 58643 GATTAATAGGGATAGTTGGGGGCATTAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 58702 Query 188 TATT 191 |||| Sbjct 58703 TATT 58706 >seq301 Length=175246 Score = 203 bits (224), Expect = 3e-50 Identities = 156/184 (85%), Gaps = 1/184 (1%) Strand=Plus/Plus Query 8 GGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACC 67 ||||| |||||||||||||||||||| ||| |||||| || ||| |||||||||| | Sbjct 47453 GGACTGTTACTTTGAAAAAATTAGAGTGTTTAAAGCAAGCTAACGCTTGAATACATTAGC 47512 Query 68 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAAT 127 |||||||||| |||||||||| || | |||||||| ||||||||||| | |||||| Sbjct 47513 ATGGAATAATGAAATAGGACGTTCGATCTTATTTTGTTGGTTTCTAGGATTG-ACGTAAT 47571 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 ||| |||| ||||||| ||||| | ||||||||||||||| |||||||||||||||||| Sbjct 47572 GATTAATAGGGATAGTTGGGGGCATTAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 47631 Query 188 TATT 191 |||| Sbjct 47632 TATT 47635 >seq58 Length=135075 Score = 203 bits (224), Expect = 3e-50 Identities = 156/184 (85%), Gaps = 1/184 (1%) Strand=Plus/Minus Query 8 GGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACC 67 ||||| |||||||||||||||||||| ||| |||||| || ||| |||||||||| | Sbjct 1295 GGACTGTTACTTTGAAAAAATTAGAGTGTTTAAAGCAAGCTAACGCTTGAATACATTAGC 1236 Query 68 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAAT 127 |||||||||| |||||||||| || | |||||||| ||||||||||| | |||||| Sbjct 1235 ATGGAATAATGAAATAGGACGTTCGATCTTATTTTGTTGGTTTCTAGGATTG-ACGTAAT 1177 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 ||| |||| ||||||| ||||| | ||||||||||||||| |||||||||||||||||| Sbjct 1176 GATTAATAGGGATAGTTGGGGGCATTAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 1117 Query 188 TATT 191 |||| Sbjct 1116 TATT 1113 >seq1362 Length=23078 Score = 113 bits (124), Expect = 5e-23 Identities = 137/182 (75%), Gaps = 11/182 (6%) Strand=Plus/Plus Query 7 AGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACAT--T 64 |||||| |||||||||||||||||| | ||| |||| |||| | ||| |||| ||| | Sbjct 10172 AGGACTGTTACTTTGAAAAAATTAGTGTGTTTAAAGTAGGCTATCGCTTGAATCCATTAT 10231 Query 65 ACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGT 124 | |||| |||||| ||||||| || |||||| || | ||||||| | | Sbjct 10232 ATCATGAAATAATGAAATAGGATGT----TTCTATCTTTT--TTTTCTAGATTTTAACTT 10285 Query 125 AATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGG 184 |||||| |||| ||||||| ||| | ||||| ||||||||||| || |||||||||| Sbjct 10286 AATGATTAATAAGGATAGTTAGGG--ATTAGTATCCAATTGTCAAA-GTAAAATTCTTGG 10342 Query 185 AT 186 || Sbjct 10343 AT 10344 >seq667 Length=47599 Score = 100 bits (110), Expect = 3e-19 Identities = 128/178 (72%), Gaps = 24/178 (13%) Strand=Plus/Plus Query 15 TACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCATGGAAT 74 || || |||||||||| || ||| ||||||||| | ||| |||| | Sbjct 35947 TAGTTAGAAAAAATTAAAGTGTTTAAAGCAGGCTATCGCTTGAAT--------------T 35992 Query 75 AATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAAT 134 |||| ||||| | ||||||||| |||||||||| | | |||||||| ||| Sbjct 35993 AATAAGATAGGTC--------CTATTTTGTTGGTTTCTAGGTTTGAC-GTAATGATTAAT 36043 Query 135 ACGGATAGTCGGGGGTG-TCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTATT 191 | | ||||| |||||| || |||||||||||||| |||||||| |||||||||| || Sbjct 36044 AGGAATAGTTGGGGGTCATCCGTATTCAATTGTCAGAGGTGAAAATCTTGGATTTTTT 36101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511946754400