Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq3303 351 2e-94 seq1881 351 2e-94 seq1347 351 2e-94 seq896 351 2e-94 seq500 351 2e-94 seq346 351 2e-94 seq301 351 2e-94 seq58 351 2e-94 >seq3303 Length=4879 Score = 351 bits (388), Expect = 2e-94 Identities = 266/311 (86%), Gaps = 2/311 (1%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCG-CTTTGGCGGGTCGCCGGCTTCTTA 78 || |||||||||||||||||||||||| ||||| | ||| ||||||| |||||||| Sbjct 4173 GAACGAGACCTTAACCTGCTAAATAGCTAGGCCTAACATTGTTAGGTCGCCAGCTTCTTA 4232 Query 79 GAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 137 ||||||||||||| | | |||||||||||||||||||||||||||||||||||||||| Sbjct 4233 GAGGGACTATCGGTGTTTAACCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 4292 Query 138 TAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGC 197 ||||||||||||||||||||||||||||||||| || || ||||||||| |||| Sbjct 4293 TAGATGTTCTGGGCCGCACGCGCGCTACACTGATGAAGTCATCGAGTTCATTTCCTTTAT 4352 Query 198 CGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTAT 257 |||||| | ||||||||||| | ||||| ||||||||||||||||||||||||| ||| Sbjct 4353 CGGAAGATATGGGTAATCTTTTGAAACTTCATCGTGCTGGGGATAGAGCATTGCAACTAT 4412 Query 258 TGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCC 317 ||||||| |||||||||| ||||||||| | |||| ||| | | |||||||||||| Sbjct 4413 TGCTCTTGAACGAGGAATCCCTAGTAAGTACAAGTCACTAGCTTGTGCTGATTACGTCCC 4472 Query 318 TGCCCTTTGTA 328 ||||||||||| Sbjct 4473 TGCCCTTTGTA 4483 >seq1881 Length=13602 Score = 351 bits (388), Expect = 2e-94 Identities = 266/311 (86%), Gaps = 2/311 (1%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCG-CTTTGGCGGGTCGCCGGCTTCTTA 78 || |||||||||||||||||||||||| ||||| | ||| ||||||| |||||||| Sbjct 707 GAACGAGACCTTAACCTGCTAAATAGCTAGGCCTAACATTGTTAGGTCGCCAGCTTCTTA 648 Query 79 GAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 137 ||||||||||||| | | |||||||||||||||||||||||||||||||||||||||| Sbjct 647 GAGGGACTATCGGTGTTTAACCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 588 Query 138 TAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGC 197 ||||||||||||||||||||||||||||||||| || || ||||||||| |||| Sbjct 587 TAGATGTTCTGGGCCGCACGCGCGCTACACTGATGAAGTCATCGAGTTCATTTCCTTTAT 528 Query 198 CGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTAT 257 |||||| | ||||||||||| | ||||| ||||||||||||||||||||||||| ||| Sbjct 527 CGGAAGATATGGGTAATCTTTTGAAACTTCATCGTGCTGGGGATAGAGCATTGCAACTAT 468 Query 258 TGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCC 317 ||||||| |||||||||| ||||||||| | |||| ||| | | |||||||||||| Sbjct 467 TGCTCTTGAACGAGGAATCCCTAGTAAGTACAAGTCACTAGCTTGTGCTGATTACGTCCC 408 Query 318 TGCCCTTTGTA 328 ||||||||||| Sbjct 407 TGCCCTTTGTA 397 >seq1347 Length=32214 Score = 351 bits (388), Expect = 2e-94 Identities = 266/311 (86%), Gaps = 2/311 (1%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCG-CTTTGGCGGGTCGCCGGCTTCTTA 78 || |||||||||||||||||||||||| ||||| | ||| ||||||| |||||||| Sbjct 12779 GAACGAGACCTTAACCTGCTAAATAGCTAGGCCTAACATTGTTAGGTCGCCAGCTTCTTA 12720 Query 79 GAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 137 ||||||||||||| | | |||||||||||||||||||||||||||||||||||||||| Sbjct 12719 GAGGGACTATCGGTGTTTAACCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 12660 Query 138 TAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGC 197 ||||||||||||||||||||||||||||||||| || || ||||||||| |||| Sbjct 12659 TAGATGTTCTGGGCCGCACGCGCGCTACACTGATGAAGTCATCGAGTTCATTTCCTTTAT 12600 Query 198 CGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTAT 257 |||||| | ||||||||||| | ||||| ||||||||||||||||||||||||| ||| Sbjct 12599 CGGAAGATATGGGTAATCTTTTGAAACTTCATCGTGCTGGGGATAGAGCATTGCAACTAT 12540 Query 258 TGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCC 317 ||||||| |||||||||| ||||||||| | |||| ||| | | |||||||||||| Sbjct 12539 TGCTCTTGAACGAGGAATCCCTAGTAAGTACAAGTCACTAGCTTGTGCTGATTACGTCCC 12480 Query 318 TGCCCTTTGTA 328 ||||||||||| Sbjct 12479 TGCCCTTTGTA 12469 Score = 351 bits (388), Expect = 2e-94 Identities = 266/311 (86%), Gaps = 2/311 (1%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCG-CTTTGGCGGGTCGCCGGCTTCTTA 78 || |||||||||||||||||||||||| ||||| | ||| ||||||| |||||||| Sbjct 31508 GAACGAGACCTTAACCTGCTAAATAGCTAGGCCTAACATTGTTAGGTCGCCAGCTTCTTA 31567 Query 79 GAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 137 ||||||||||||| | | |||||||||||||||||||||||||||||||||||||||| Sbjct 31568 GAGGGACTATCGGTGTTTAACCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 31627 Query 138 TAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGC 197 ||||||||||||||||||||||||||||||||| || || ||||||||| |||| Sbjct 31628 TAGATGTTCTGGGCCGCACGCGCGCTACACTGATGAAGTCATCGAGTTCATTTCCTTTAT 31687 Query 198 CGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTAT 257 |||||| | ||||||||||| | ||||| ||||||||||||||||||||||||| ||| Sbjct 31688 CGGAAGATATGGGTAATCTTTTGAAACTTCATCGTGCTGGGGATAGAGCATTGCAACTAT 31747 Query 258 TGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCC 317 ||||||| |||||||||| ||||||||| | |||| ||| | | |||||||||||| Sbjct 31748 TGCTCTTGAACGAGGAATCCCTAGTAAGTACAAGTCACTAGCTTGTGCTGATTACGTCCC 31807 Query 318 TGCCCTTTGTA 328 ||||||||||| Sbjct 31808 TGCCCTTTGTA 31818 >seq896 Length=46539 Score = 351 bits (388), Expect = 2e-94 Identities = 266/311 (86%), Gaps = 2/311 (1%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCG-CTTTGGCGGGTCGCCGGCTTCTTA 78 || |||||||||||||||||||||||| ||||| | ||| ||||||| |||||||| Sbjct 45833 GAACGAGACCTTAACCTGCTAAATAGCTAGGCCTAACATTGTTAGGTCGCCAGCTTCTTA 45892 Query 79 GAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 137 ||||||||||||| | | |||||||||||||||||||||||||||||||||||||||| Sbjct 45893 GAGGGACTATCGGTGTTTAACCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 45952 Query 138 TAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGC 197 ||||||||||||||||||||||||||||||||| || || ||||||||| |||| Sbjct 45953 TAGATGTTCTGGGCCGCACGCGCGCTACACTGATGAAGTCATCGAGTTCATTTCCTTTAT 46012 Query 198 CGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTAT 257 |||||| | ||||||||||| | ||||| ||||||||||||||||||||||||| ||| Sbjct 46013 CGGAAGATATGGGTAATCTTTTGAAACTTCATCGTGCTGGGGATAGAGCATTGCAACTAT 46072 Query 258 TGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCC 317 ||||||| |||||||||| ||||||||| | |||| ||| | | |||||||||||| Sbjct 46073 TGCTCTTGAACGAGGAATCCCTAGTAAGTACAAGTCACTAGCTTGTGCTGATTACGTCCC 46132 Query 318 TGCCCTTTGTA 328 ||||||||||| Sbjct 46133 TGCCCTTTGTA 46143 >seq500 Length=39404 Score = 351 bits (388), Expect = 2e-94 Identities = 266/311 (86%), Gaps = 2/311 (1%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCG-CTTTGGCGGGTCGCCGGCTTCTTA 78 || |||||||||||||||||||||||| ||||| | ||| ||||||| |||||||| Sbjct 707 GAACGAGACCTTAACCTGCTAAATAGCTAGGCCTAACATTGTTAGGTCGCCAGCTTCTTA 648 Query 79 GAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 137 ||||||||||||| | | |||||||||||||||||||||||||||||||||||||||| Sbjct 647 GAGGGACTATCGGTGTTTAACCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 588 Query 138 TAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGC 197 ||||||||||||||||||||||||||||||||| || || ||||||||| |||| Sbjct 587 TAGATGTTCTGGGCCGCACGCGCGCTACACTGATGAAGTCATCGAGTTCATTTCCTTTAT 528 Query 198 CGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTAT 257 |||||| | ||||||||||| | ||||| ||||||||||||||||||||||||| ||| Sbjct 527 CGGAAGATATGGGTAATCTTTTGAAACTTCATCGTGCTGGGGATAGAGCATTGCAACTAT 468 Query 258 TGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCC 317 ||||||| |||||||||| ||||||||| | |||| ||| | | |||||||||||| Sbjct 467 TGCTCTTGAACGAGGAATCCCTAGTAAGTACAAGTCACTAGCTTGTGCTGATTACGTCCC 408 Query 318 TGCCCTTTGTA 328 ||||||||||| Sbjct 407 TGCCCTTTGTA 397 >seq346 Length=59818 Score = 351 bits (388), Expect = 2e-94 Identities = 266/311 (86%), Gaps = 2/311 (1%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCG-CTTTGGCGGGTCGCCGGCTTCTTA 78 || |||||||||||||||||||||||| ||||| | ||| ||||||| |||||||| Sbjct 59112 GAACGAGACCTTAACCTGCTAAATAGCTAGGCCTAACATTGTTAGGTCGCCAGCTTCTTA 59171 Query 79 GAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 137 ||||||||||||| | | |||||||||||||||||||||||||||||||||||||||| Sbjct 59172 GAGGGACTATCGGTGTTTAACCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 59231 Query 138 TAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGC 197 ||||||||||||||||||||||||||||||||| || || ||||||||| |||| Sbjct 59232 TAGATGTTCTGGGCCGCACGCGCGCTACACTGATGAAGTCATCGAGTTCATTTCCTTTAT 59291 Query 198 CGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTAT 257 |||||| | ||||||||||| | ||||| ||||||||||||||||||||||||| ||| Sbjct 59292 CGGAAGATATGGGTAATCTTTTGAAACTTCATCGTGCTGGGGATAGAGCATTGCAACTAT 59351 Query 258 TGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCC 317 ||||||| |||||||||| ||||||||| | |||| ||| | | |||||||||||| Sbjct 59352 TGCTCTTGAACGAGGAATCCCTAGTAAGTACAAGTCACTAGCTTGTGCTGATTACGTCCC 59411 Query 318 TGCCCTTTGTA 328 ||||||||||| Sbjct 59412 TGCCCTTTGTA 59422 >seq301 Length=175246 Score = 351 bits (388), Expect = 2e-94 Identities = 266/311 (86%), Gaps = 2/311 (1%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCG-CTTTGGCGGGTCGCCGGCTTCTTA 78 || |||||||||||||||||||||||| ||||| | ||| ||||||| |||||||| Sbjct 48041 GAACGAGACCTTAACCTGCTAAATAGCTAGGCCTAACATTGTTAGGTCGCCAGCTTCTTA 48100 Query 79 GAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 137 ||||||||||||| | | |||||||||||||||||||||||||||||||||||||||| Sbjct 48101 GAGGGACTATCGGTGTTTAACCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 48160 Query 138 TAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGC 197 ||||||||||||||||||||||||||||||||| || || ||||||||| |||| Sbjct 48161 TAGATGTTCTGGGCCGCACGCGCGCTACACTGATGAAGTCATCGAGTTCATTTCCTTTAT 48220 Query 198 CGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTAT 257 |||||| | ||||||||||| | ||||| ||||||||||||||||||||||||| ||| Sbjct 48221 CGGAAGATATGGGTAATCTTTTGAAACTTCATCGTGCTGGGGATAGAGCATTGCAACTAT 48280 Query 258 TGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCC 317 ||||||| |||||||||| ||||||||| | |||| ||| | | |||||||||||| Sbjct 48281 TGCTCTTGAACGAGGAATCCCTAGTAAGTACAAGTCACTAGCTTGTGCTGATTACGTCCC 48340 Query 318 TGCCCTTTGTA 328 ||||||||||| Sbjct 48341 TGCCCTTTGTA 48351 >seq58 Length=135075 Score = 351 bits (388), Expect = 2e-94 Identities = 266/311 (86%), Gaps = 2/311 (1%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCG-CTTTGGCGGGTCGCCGGCTTCTTA 78 || |||||||||||||||||||||||| ||||| | ||| ||||||| |||||||| Sbjct 707 GAACGAGACCTTAACCTGCTAAATAGCTAGGCCTAACATTGTTAGGTCGCCAGCTTCTTA 648 Query 79 GAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 137 ||||||||||||| | | |||||||||||||||||||||||||||||||||||||||| Sbjct 647 GAGGGACTATCGGTGTTTAACCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 588 Query 138 TAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGC 197 ||||||||||||||||||||||||||||||||| || || ||||||||| |||| Sbjct 587 TAGATGTTCTGGGCCGCACGCGCGCTACACTGATGAAGTCATCGAGTTCATTTCCTTTAT 528 Query 198 CGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTAT 257 |||||| | ||||||||||| | ||||| ||||||||||||||||||||||||| ||| Sbjct 527 CGGAAGATATGGGTAATCTTTTGAAACTTCATCGTGCTGGGGATAGAGCATTGCAACTAT 468 Query 258 TGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCC 317 ||||||| |||||||||| ||||||||| | |||| ||| | | |||||||||||| Sbjct 467 TGCTCTTGAACGAGGAATCCCTAGTAAGTACAAGTCACTAGCTTGTGCTGATTACGTCCC 408 Query 318 TGCCCTTTGTA 328 ||||||||||| Sbjct 407 TGCCCTTTGTA 397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947098318080