Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1409 681 0.0 seq1347 681 0.0 seq301 681 0.0 seq298 93.3 1e-16 >seq1409 Length=19301 Score = 681 bits (754), Expect = 0.0 Identities = 475/532 (89%), Gaps = 10/532 (2%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| ||||| ||||||||||||||| ||||| Sbjct 18690 CTTTTATTCTACATGAGATTTCTGTTCTCAATGAGCTACCCTTAGGACACCTGTGTTATC 18749 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 18750 ATTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACATGGATC 18809 Query 127 GGCCCGCGAAGGAC--CTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATT 184 | | | || || ||||| || || ||| | ||| |||| ||| ||| ||| Sbjct 18810 ATCAC-CTAACGATGACTTAATTCCGAAAGTTGGGCAT--AAGCCCAGCTCCACTTAATT 18866 Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG--CCGAAACGGCTCCCA 242 || |||||||||||||||||| ||||||||||||||||| || || |||| |||||| Sbjct 18867 GAATAAGTAAAAAAACGATAAAGGTAGTGGTATTTCACTGTCGTGCCTAAACA-CTCCCA 18925 Query 243 CTTATTCTACA-CCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301 ||||| ||||| ||||| | ||| |||||||| ||| |||||||||||||||||||||| Sbjct 18926 CTTATCCTACACCCTCT-ATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGG 18984 Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 18985 TCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 19044 Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 19045 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 19104 Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 19105 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 19164 Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 19165 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 19216 >seq1347 Length=32214 Score = 681 bits (754), Expect = 0.0 Identities = 475/532 (89%), Gaps = 10/532 (2%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| ||||| ||||||||||||||| ||||| Sbjct 9413 CTTTTATTCTACATGAGATTTCTGTTCTCAATGAGCTACCCTTAGGACACCTGTGTTATC 9472 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 9473 ATTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACATGGATC 9532 Query 127 GGCCCGCGAAGGAC--CTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATT 184 | | | || || ||||| || || ||| | ||| |||| ||| ||| ||| Sbjct 9533 ATCAC-CTAACGATGACTTAATTCCGAAAGTTGGGCAT--AAGCCCAGCTCCACTTAATT 9589 Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG--CCGAAACGGCTCCCA 242 || |||||||||||||||||| ||||||||||||||||| || || |||| |||||| Sbjct 9590 GAATAAGTAAAAAAACGATAAAGGTAGTGGTATTTCACTGTCGTGCCTAAACA-CTCCCA 9648 Query 243 CTTATTCTACA-CCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301 ||||| ||||| ||||| | ||| |||||||| ||| |||||||||||||||||||||| Sbjct 9649 CTTATCCTACACCCTCT-ATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGG 9707 Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 9708 TCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 9767 Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9768 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 9827 Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9828 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 9887 Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 9888 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 9939 >seq301 Length=175246 Score = 681 bits (754), Expect = 0.0 Identities = 475/532 (89%), Gaps = 10/532 (2%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| ||||| ||||||||||||||| ||||| Sbjct 51661 CTTTTATTCTACATGAGATTTCTGTTCTCAATGAGCTACCCTTAGGACACCTGTGTTATC 51602 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 51601 ATTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACATGGATC 51542 Query 127 GGCCCGCGAAGGAC--CTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATT 184 | | | || || ||||| || || ||| | ||| |||| ||| ||| ||| Sbjct 51541 ATCAC-CTAACGATGACTTAATTCCGAAAGTTGGGCAT--AAGCCCAGCTCCACTTAATT 51485 Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG--CCGAAACGGCTCCCA 242 || |||||||||||||||||| ||||||||||||||||| || || |||| |||||| Sbjct 51484 GAATAAGTAAAAAAACGATAAAGGTAGTGGTATTTCACTGTCGTGCCTAAACA-CTCCCA 51426 Query 243 CTTATTCTACACCTCTCAA-GTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301 ||||| ||||||| ||| | ||| |||||||| ||| |||||||||||||||||||||| Sbjct 51425 CTTATCCTACACC-CTCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGG 51367 Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 51366 TCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 51307 Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 51306 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 51247 Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 51246 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 51187 Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 51186 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 51135 >seq298 Length=114947 Score = 93.3 bits (102), Expect = 1e-16 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 262 GTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTC 321 ||| |||||||| ||| |||||||| ||| || ||| ||||||||||||||||||| Sbjct 85308 GTCTTTTCACAATGTCAAACTAGAGTTAAGTTCCACAAAATCTTCTTTCCCCGCTGATTT 85367 Query 322 CGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 |||||| ||||| || |||||||||||||| || ||||| Sbjct 85368 TAACAAGCCACATCCCTCGGTTGTGGTTTCGCTAGGTAATAGAT 85411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635024461280