Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq1347 129 1e-27 seq1409 125 1e-26 seq301 125 1e-26 >seq1347 Length=32214 Score = 129 bits (142), Expect = 1e-27 Identities = 135/173 (78%), Gaps = 6/173 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| || || |||||| ||| || || ||| | | | Sbjct 9088 GTACGAGAGGAACCGTTGA-TTCGGA-TATTTGGTTCATGCACCTATCCGACAGGATAAT 9031 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 9030 GGTGCGAAGCTACCATCCGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCTA 8971 Query 121 GAACGGGGTGATTCTCTCCTG---CACATCGTAGTCGGATACGAATAG-GCTT 169 ||||| | |||| | |||| | || |||| | ||| |||||| |||| Sbjct 8970 GAACGTGACGATTTTTACCTGACCTATATATTAGTTGTATAAGAATAGAGCTT 8918 >seq1409 Length=19301 Score = 125 bits (138), Expect = 1e-26 Identities = 114/141 (81%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| || || |||||| ||| || || ||| | | | Sbjct 18365 GTACGAGAGGAACCGTTGA-TTCGGA-TATTTGGTTCATGCACCTATCCGACAGGATAAT 18308 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 18307 GGTGCGAAGCTACCATCCGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCTA 18248 Query 121 GAACGGGGTGATTCTCTCCTG 141 ||||| | |||| | |||| Sbjct 18247 GAACGTGACGATTTTTACCTG 18227 >seq301 Length=175246 Score = 125 bits (138), Expect = 1e-26 Identities = 114/141 (81%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| || || |||||| ||| || || ||| | | | Sbjct 51986 GTACGAGAGGAACCGTTGA-TTCGGA-TATTTGGTTCATGCACCTATCCGACAGGATAAT 52043 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 52044 GGTGCGAAGCTACCATCCGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCTA 52103 Query 121 GAACGGGGTGATTCTCTCCTG 141 ||||| | |||| | |||| Sbjct 52104 GAACGTGACGATTTTTACCTG 52124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819114807040