Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq717 154 1e-32 seq1702 95.1 1e-14 >seq717 Length=48811 Score = 154 bits (170), Expect = 1e-32 Identities = 233/331 (70%), Gaps = 3/331 (1%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||||||||| |||||||| || ||||| || ||||| || || | Sbjct 4176 ATCTGGCAAATGTACAAAAAGGCCGAAGCTTCATTTTGGACTGTTGAGGAAGTTGACCTT 4235 Query 61147 TCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAA--- 61203 ||||| || |||||||| |||||| | | | || |||| || | ||| ||| Sbjct 4236 TCCAAGGATATGAATGATTGGGAGTATAAACTTAACGATGAAGAAAAATTCTTTATTTCT 4295 Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 || || ||||| ||||||||||| ||||| ||||| |||||||| |||||| |||||||| Sbjct 4296 CACGTTTTGGCCTTCTTTGCCGCCTCGGATGGTATTGTCAATGAAAATTTAGTGGAACGT 4355 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 || | || || ||| | | || || | ||||| || || || ||||| || Sbjct 4356 TTTAGTAATGAAGTCCAAATTCCAGAAGCAAGATGTTTTTATGGATTTCAGATCATGATC 4415 Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCG 61383 || ||| |||| || || |||||| | | || ||| | || |||| ||||| | Sbjct 4416 GAAAATATCCATTCAGAAATGTACTCCCTCTTGATTGATTCTTATATCAAGGAGCCATCT 4475 Query 61384 GAACGTGAACGATTGTTCAATGCCATCGAGA 61414 || | ||| | ||| ||||||| |||| Sbjct 4476 CAAAGAGAATACCTATTCGATGCCATTGAGA 4506 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 61435 AAAGCGGATTGGGC-CTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATT 61493 |||||||||||||| |||| || |||| || || || |||||| |||||| | Sbjct 4606 AAAGCGGATTGGGCTCTTCGAT-GGATTTCCGATAAGGAATCTTCATTTGCTGAACGTCT 4664 Query 61494 GCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTG 61553 | || ||||| | || || || |||| || |||| | || || |||||||||| Sbjct 4665 TGTAGCGTTTGCCGCTGTTGAAGGAATATTCTTTTCTGGAGCTTTCGCGTCAATCTTTTG 4724 Query 61554 GTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGA 61613 ||| |||||| | ||| | ||||| || | || || ||| || | || || || || Sbjct 4725 GTTAAAGAAAAGAGGAATGATGCCAGGATTAACTTTTTCCAACGAACTAATTTCTCGAGA 4784 Query 61614 CGAGGGCATGCATTGTGATTTTGC 61637 || || |||||||||||||||| Sbjct 4785 TGAAGGATTGCATTGTGATTTTGC 4808 >seq1702 Length=19207 Score = 95.1 bits (104), Expect = 1e-14 Identities = 199/297 (67%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 |||||| ||||| | | ||| || || || || | ||| ||||| || || || | Sbjct 13605 CATAAAAAGATCCGAAACCCAAAGTGCATAAAATAAATCCCGTGCACGAACTTCTTCTTT 13664 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 || |||||| || || | || ||||| ||||| | |||||| | ||| | || Sbjct 13665 TCCAGTATTTTTTTTTAAATCCATAAAATCAAAAATGTCAGGATGCCACGTTTCTAAATA 13724 Query 66460 GATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTT 66519 || || |||| |||| ||||||| || |||||||| || || | |||| ||| || Sbjct 13725 AATAGCAAACGCGCCCGGACGTTTGTTTCCTCCTTGGTCAACATATCTAGCGGTATTATT 13784 Query 66520 GAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGA 66579 | || || ||||| || | | || || || | ||||| || || | || || Sbjct 13785 ATAAACGCGTAACATAGGAATAATTCCATTTGAATAACCATTTGTTCCAGCAATATAAGA 13844 Query 66580 TCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGAT 66636 |||| || || || | |||| |||| |||||||||||| || ||||| || || Sbjct 13845 TCCTGTCGCACGAATGTTATGAATGTTCACACCAATACCACCTGCAGTCTTAGAAAT 13901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397515985060400