Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_032108.1 Length=589068 Score E Sequences producing significant alignments: (Bits) Value seq6 100 1e-15 >seq6 Length=229349 Score = 100 bits (110), Expect = 1e-15 Identities = 166/236 (70%), Gaps = 8/236 (3%) Strand=Plus/Plus Query 12813 TACCTAGGGTCTTTCCTCTAACTTCACGGCAACCTTGAGAAGTC---TTGTTCCAAATGC 12869 |||| || |||||||| | || |||| ||| ||| |||| || ||||| | | Sbjct 199371 TACCAAGAGTCTTTCCACGAATTTCAT---AACATTGGGAAGAAACTTTATTCCAGTTCC 199427 Query 12870 CTTGGTGTAGTTCTTTGTTTCTATCTCCAACCTGACGAGAAAGATTAATTAGT-TGTCCT 12928 |||| |||| |||| |||||| ||| || | || | ||| | || || || | | | Sbjct 199428 CTTGATGTAATTCTATGTTTCGATCACCCAATTGTCTAGACA-ATGAAATAATCTCAGCA 199486 Query 12929 ATGATGAGCTCTGCCACGCTTCTAGTGTTGCAAAAGGGAGAATTAAAGACTGCAATGCCT 12988 || || | ||||| || |||||| |||||| || |||||||| || |||||||| ||| Sbjct 199487 ATAATTAATTCTGCAACACTTCTACTGTTGCTGAATGGAGAATTGAATACTGCAATACCT 199546 Query 12989 AGTTTGGTAGCCATGTCTAGATTAACCTGATCGTAACCAATGCAGAAGCATCCTAT 13044 | |||| ||| || |||| ||| |||| ||||| ||||||||||| || Sbjct 199547 CGATTGGCAGCAGCTTCAAGATCAACTTGATTAGTTCCAATACAGAAGCATCCAAT 199602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1884627148601355