Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq2830 340 3e-91 seq384 340 3e-91 seq167 134 3e-29 seq5144 114 2e-23 seq1401 102 1e-19 seq3626 82.4 1e-13 >seq2830 Length=8255 Score = 340 bits (376), Expect = 3e-91 Identities = 244/280 (87%), Gaps = 1/280 (0%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98 ||||| || | | ||||| |||||| ||||| |||||||||||||||||||||||| Sbjct 6972 ATGCCATTAATTTGGTGTTGCGGGGAATTTGGACTGTTACTTTGAAAAAATTAGAGTGTT 7031 Query 99 CAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158 |||||| || ||| |||||||||||||||||||||| |||||||||| || | | Sbjct 7032 TAAAGCAAGCTAACGCTTGAATACATTAGCATGGAATAATGAAATAGGACGTTCGATCTT 7091 Query 159 ATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTAT 218 ||||||||||||||||||| | |||||||||||||||||||||| ||||| | ||||| Sbjct 7092 ATTTTGTTGGTTTCTAGGATTGACGTAATGATTAATAGGGATAGTTGGGGGCATTAGTAT 7151 Query 219 TCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCA 278 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 7152 TCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCATTTG 7211 Query 279 CCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||||||||||||||||||||| |||||||||||||||| Sbjct 7212 CCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTAGGGG 7250 >seq384 Length=51119 Score = 340 bits (376), Expect = 3e-91 Identities = 244/280 (87%), Gaps = 1/280 (0%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98 ||||| || | | ||||| |||||| ||||| |||||||||||||||||||||||| Sbjct 49836 ATGCCATTAATTTGGTGTTGCGGGGAATTTGGACTGTTACTTTGAAAAAATTAGAGTGTT 49895 Query 99 CAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158 |||||| || ||| |||||||||||||||||||||| |||||||||| || | | Sbjct 49896 TAAAGCAAGCTAACGCTTGAATACATTAGCATGGAATAATGAAATAGGACGTTCGATCTT 49955 Query 159 ATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTAT 218 ||||||||||||||||||| | |||||||||||||||||||||| ||||| | ||||| Sbjct 49956 ATTTTGTTGGTTTCTAGGATTGACGTAATGATTAATAGGGATAGTTGGGGGCATTAGTAT 50015 Query 219 TCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCA 278 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 50016 TCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCATTTG 50075 Query 279 CCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||||||||||||||||||||| |||||||||||||||| Sbjct 50076 CCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTAGGGG 50114 >seq167 Length=90583 Score = 134 bits (148), Expect = 3e-29 Identities = 145/194 (75%), Gaps = 26/194 (13%) Strand=Plus/Plus Query 76 TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAAT 135 || || |||||||||| |||||| ||||||||| | ||| |||| | Sbjct 59483 TAGTTAGAAAAAATTAAAGTGTTTAAAGCAGGCTATCGCTTGAAT--------------T 59528 Query 136 AATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATA 195 |||| ||||| | |||||||||||||||||||| | |||||||||||||| Sbjct 59529 AATAAGATAGGTC--------CTATTTTGTTGGTTTCTAGGTTTGACGTAATGATTAATA 59580 Query 196 GGGATAGTCGGGGGT-GTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAA 254 || ||||| |||||| || ||||||||||||||||||||||| |||||||||| || | Sbjct 59581 GGAATAGTTGGGGGTCATCCGTATTCAATTGTCAGAGGTGAAAATCTTGGATTTTTTTTA 59640 Query 255 ---GACTAACTACT 265 ||||||||||| Sbjct 59641 TTGGACTAACTACT 59654 Score = 80.6 bits (88), Expect = 5e-13 Identities = 63/73 (86%), Gaps = 3/73 (4%) Strand=Plus/Plus Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305 ||||||| ||||||||||||||||| | || |||||| ||||||||||||||| ||| Sbjct 59735 TTTATTG--GACTAACTACTGCGAAATCATTTGCCAAGGGTGTTTTCATTAATCA-AGAA 59791 Query 306 CGAAAGTTAGGGG 318 ||||| ||||||| Sbjct 59792 CGAAAATTAGGGG 59804 >seq5144 Length=2439 Score = 114 bits (126), Expect = 2e-23 Identities = 172/244 (70%), Gaps = 23/244 (9%) Strand=Plus/Minus Query 62 GGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATA 121 |||| |||||| |||||||||||||||||| || || |||| | || | ||| |||| Sbjct 694 GGAGTTAGGACTGTTACTTTGAAAAAATTAGTGTATTTAAAGTAAGCTATCGCTTGAATC 635 Query 122 CATTAGCATGGAATAATAGAA-----TAGGACGTGC-----GGTTCTATTTTGTTGGTTT 171 |||||||||| |||||| || ||||| || | || | |||| ||| || Sbjct 634 CATTAGCATGAAATAATGAAATACTGTAGGATGTTCCTATTTTTTTTTTTTTTTTGATTC 575 Query 172 CTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAG 231 |||| | |||||||||||| |||||| |||| | ||||||||||||||| | Sbjct 574 CTAGATTTTACCTAATGATTAATAAGGATAGCTGGGG--CTTAGTATTCAATTGTCA-AA 518 Query 232 GTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTT 291 || |||||||||| ||| ||||||| |||||| | | |||||| ||| Sbjct 517 GTAAAATTCTTGG----------GACAAACTACTACGAAAGTTATTGCTAAGGATACTTT 468 Query 292 CATT 295 |||| Sbjct 467 CATT 464 >seq1401 Length=61029 Score = 102 bits (112), Expect = 1e-19 Identities = 156/222 (70%), Gaps = 28/222 (13%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAA 134 |||||||||||||||||| ||||| |||| |||| | ||| |||| ||||| |||| || Sbjct 8531 TTACTTTGAAAAAATTAGTGTGTTTAAAGTAGGCTATCGCTTGAATCCATTATCATGAAA 8590 Query 135 TAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAG-GACCGCCGTAATGATTAA 193 |||| ||||| | || |||||| || || ||||||| | |||||||||| Sbjct 8591 TAATGAAATAGAATGT----TTCTATCTTTTT--TTTCTAGATTTTAACTTAATGATTAA 8644 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 || ||||||| ||| | ||||||||| | || |||||||||||| Sbjct 8645 TAAGGATAGTTAGGG---------TCCAATTGTCA-AAGTAAAATTCTTGGAT------- 8687 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATT 295 || |||| ||| ||| || | |||||| |||||||| Sbjct 8688 ----AAATTACTACGATAGCATTTGCTAAGGATATTTTCATT 8725 >seq3626 Length=8520 Score = 82.4 bits (90), Expect = 1e-13 Identities = 132/189 (70%), Gaps = 17/189 (9%) Strand=Plus/Plus Query 62 GGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATA 121 |||| |||||| ||||||||||||||||| || || || | | | ||| Sbjct 7906 GGAGTTAGGACTGTTACTTTGAAAAAATTAATGTATTTAATGTA---------TTAAATC 7956 Query 122 CATTAGCATGGAATAATAGAAT-----AGGACGTGCGGTTCTATTTTGTTGGTTTCTAGG 176 |||||||||| |||||| ||| |||| || | | | |||| ||| || || | Sbjct 7957 CATTAGCATGTAATAATGAAATACTGCAGGATGTTCCTATTTTTTTTTTTGATTCCTGGA 8016 Query 177 ACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAA 236 | |||||||||||| ||||||| || | | ||||||||||||||| | || || Sbjct 8017 TTTTACCTAATGATTAATAAGGATAGTTGGAG--CTTAGTATTCAATTGTCA-AAGTAAA 8073 Query 237 ATTCTTGGA 245 ||||||||| Sbjct 8074 ATTCTTGGA 8082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915067515648