Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq2830 345 7e-93 seq384 345 7e-93 >seq2830 Length=8255 Score = 345 bits (382), Expect = 7e-93 Identities = 232/258 (90%), Gaps = 1/258 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || || | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7756 ACTCGATGACTTCATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 7697 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||||| || | | || |||||||||||||||||| || Sbjct 7696 CCTGTTATTGCCTCAAACTTCCATCGGTTAAACACCGATAGTCCCTCTAAGAAGCTGGCG 7637 Query 122 ACC-AACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 ||| ||| || | | ||||||||||||||||||||||||||||||| |||||||| Sbjct 7636 ACCTAACAATGTTAGGCCTAGCTATTTAGCAGGTTAAGGTCTCGTTCGTTAACGGAATTA 7577 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7576 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 7517 Query 241 AAGAGCTATCAATCTGTC 258 ||||||| |||||||||| Sbjct 7516 AAGAGCTCTCAATCTGTC 7499 >seq384 Length=51119 Score = 345 bits (382), Expect = 7e-93 Identities = 232/258 (90%), Gaps = 1/258 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || || | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 50620 ACTCGATGACTTCATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 50561 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||||| || | | || |||||||||||||||||| || Sbjct 50560 CCTGTTATTGCCTCAAACTTCCATCGGTTAAACACCGATAGTCCCTCTAAGAAGCTGGCG 50501 Query 122 ACC-AACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 ||| ||| || | | ||||||||||||||||||||||||||||||| |||||||| Sbjct 50500 ACCTAACAATGTTAGGCCTAGCTATTTAGCAGGTTAAGGTCTCGTTCGTTAACGGAATTA 50441 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 50440 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 50381 Query 241 AAGAGCTATCAATCTGTC 258 ||||||| |||||||||| Sbjct 50380 AAGAGCTCTCAATCTGTC 50363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796688259756