Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq6861 681 0.0 seq1835 681 0.0 seq7334 549 6e-154 seq265 102 3e-19 >seq6861 Length=1543 Score = 681 bits (754), Expect = 0.0 Identities = 475/532 (89%), Gaps = 10/532 (2%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| ||||| ||||||||||||||| ||||| Sbjct 682 CTTTTATTCTACATGAGATTTCTGTTCTCAATGAGCTACCCTTAGGACACCTGTGTTATC 741 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 742 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACATGGATC 801 Query 127 GGCCCGCGAAGGAC--CTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATT 184 | | | || || ||||| || || ||| | ||| |||| ||| ||| ||| Sbjct 802 ATCAC-CTAACGATGACTTAATTCCGAAAGTTGGGCAT--AAGCCCAGCTCCACTTAATT 858 Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG--CCGAAACGGCTCCCA 242 || |||||||||||||||||| ||||||||||||||||| || || |||| |||||| Sbjct 859 GAATAAGTAAAAAAACGATAAAGGTAGTGGTATTTCACTGTCGTGCCTAAACA-CTCCCA 917 Query 243 CTTATTCTACA-CCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301 ||||| ||||| ||||| | ||| |||||||| ||| |||||||||||||||||||||| Sbjct 918 CTTATCCTACACCCTCT-ATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGG 976 Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 977 TCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 1036 Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1037 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 1096 Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1097 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 1156 Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1157 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 1208 >seq1835 Length=19635 Score = 681 bits (754), Expect = 0.0 Identities = 475/532 (89%), Gaps = 10/532 (2%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| ||||| ||||||||||||||| ||||| Sbjct 862 CTTTTATTCTACATGAGATTTCTGTTCTCAATGAGCTACCCTTAGGACACCTGTGTTATC 803 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 802 ATTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACATGGATC 743 Query 127 GGCCCGCGAAGGAC--CTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATT 184 | | | || || ||||| || || ||| | ||| |||| ||| ||| ||| Sbjct 742 ATCAC-CTAATGATGACTTAATTCCGAAAGTTGGGCAT--AAGCCCAGCTCCACTTAATT 686 Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG--CCGAAACGGCTCCCA 242 || |||||||||||||||||| ||||||||||||||||| || || |||| |||||| Sbjct 685 GAATAAGTAAAAAAACGATAAAGGTAGTGGTATTTCACTGTCGTGCCTAAACA-CTCCCA 627 Query 243 CTTATTCTACACCTCTCAA-GTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301 ||||| ||||||| ||| | ||| |||||||| ||| |||||||||||||||||||||| Sbjct 626 CTTATCCTACACC-CTCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGG 568 Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 567 TCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 508 Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 507 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 448 Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 447 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 388 Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 387 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 336 >seq7334 Length=1394 Score = 549 bits (608), Expect = 6e-154 Identities = 349/374 (93%), Gaps = 5/374 (1%) Strand=Plus/Minus Query 165 AAGACCAGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTT 224 ||| |||| ||| ||| ||||| |||||||||||||||||| ||||||||||||||||| Sbjct 1367 AAGCCCAGCTCCACTTAATTGAATAAGTAAAAAAACGATAAAGGTAGTGGTATTTCACTG 1308 Query 225 GCG--CCGAAACGGCTCCCACTTATTCTACACCTCTCAA-GTCATTTCACAAAGTCGGAC 281 || || |||| ||||||||||| ||||||| ||| | ||| |||||||| ||| || Sbjct 1307 TCGTGCCTAAACA-CTCCCACTTATCCTACACC-CTCTATGTCTTTTCACAATGTCAAAC 1250 Query 282 TAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGG 341 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1249 TAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGG 1190 Query 342 CTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGC 401 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1189 CTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGC 1130 Query 402 GTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCG 461 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1129 GTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCG 1070 Query 462 TTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAC 521 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1069 TTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAC 1010 Query 522 ATTGCGTCAACATC 535 ||||||| | |||| Sbjct 1009 ATTGCGTTAGCATC 996 >seq265 Length=87683 Score = 102 bits (112), Expect = 3e-19 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 262 GTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTC 321 ||| |||||||| ||| |||||||| ||| |||||| ||||||||||||||||||| Sbjct 18648 GTCTTTTCACAATGTCAAACTAGAGTTAAGTTCAACAAAATCTTCTTTCCCCGCTGATTT 18707 Query 322 CGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 ||||||| ||||| || |||||||||||||| || ||||| Sbjct 18708 TACCAAGCCACATCCCTCGGTTGTGGTTTCGCTAGGTAATAGAT 18751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634963288448