Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq1835 129 1e-27 seq6861 125 1e-26 seq638 125 1e-26 seq198 125 1e-26 seq74 125 1e-26 >seq1835 Length=19635 Score = 129 bits (142), Expect = 1e-27 Identities = 135/173 (78%), Gaps = 6/173 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| || || |||||| ||| || || ||| | | | Sbjct 1187 GTACGAGAGGAACCGTTGA-TTCGGA-TATTTGGTTCATGCACCTATCCGACAGGATAAT 1244 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 1245 GGTGCGAAGCTACCATCCGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCTA 1304 Query 121 GAACGGGGTGATTCTCTCCTG---CACATCGTAGTCGGATACGAATAG-GCTT 169 ||||| | |||| | |||| | || |||| | ||| |||||| |||| Sbjct 1305 GAACGTGACGATTTTTACCTGACCTATATATTAGTTGTATAAGAATAGAGCTT 1357 >seq6861 Length=1543 Score = 125 bits (138), Expect = 1e-26 Identities = 114/141 (81%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| || || |||||| ||| || || ||| | | | Sbjct 357 GTACGAGAGGAACCGTTGA-TTCGGA-TATTTGGTTCATGCACCTATCCGACAGGATAAT 300 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 299 GGTGCGAAGCTACCATCCGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCTA 240 Query 121 GAACGGGGTGATTCTCTCCTG 141 ||||| | |||| | |||| Sbjct 239 GAACGTGACGATTTTTACCTG 219 >seq638 Length=35396 Score = 125 bits (138), Expect = 1e-26 Identities = 114/141 (81%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| || || |||||| ||| || || ||| | | | Sbjct 35012 GTACGAGAGGAACCGTTGA-TTCGGA-TATTTGGTTCATGCACCTATCCGACAGGATAAT 34955 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 34954 GGTGCGAAGCTACCATCCGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCTA 34895 Query 121 GAACGGGGTGATTCTCTCCTG 141 ||||| | |||| | |||| Sbjct 34894 GAACGTGACGATTTTTACCTG 34874 >seq198 Length=63599 Score = 125 bits (138), Expect = 1e-26 Identities = 114/141 (81%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| || || |||||| ||| || || ||| | | | Sbjct 385 GTACGAGAGGAACCGTTGA-TTCGGA-TATTTGGTTCATGCACCTATCCGACAGGATAAT 442 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 443 GGTGCGAAGCTACCATCCGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCTA 502 Query 121 GAACGGGGTGATTCTCTCCTG 141 ||||| | |||| | |||| Sbjct 503 GAACGTGACGATTTTTACCTG 523 >seq74 Length=87275 Score = 125 bits (138), Expect = 1e-26 Identities = 114/141 (81%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| || || |||||| ||| || || ||| | | | Sbjct 86891 GTACGAGAGGAACCGTTGA-TTCGGA-TATTTGGTTCATGCACCTATCCGACAGGATAAT 86834 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 86833 GGTGCGAAGCTACCATCCGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCTA 86774 Query 121 GAACGGGGTGATTCTCTCCTG 141 ||||| | |||| | |||| Sbjct 86773 GAACGTGACGATTTTTACCTG 86753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819085118464