Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq2830 659 0.0 seq384 659 0.0 seq142 118 3e-24 seq638 114 4e-23 seq2377 100 9e-19 seq1321 100 9e-19 seq486 93.3 1e-16 seq167 93.3 1e-16 >seq2830 Length=8255 Score = 659 bits (730), Expect = 0.0 Identities = 455/510 (89%), Gaps = 6/510 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| ||| || ||||| ||| |||| |||||||||||||||||| Sbjct 6780 GTACTCATTCCAATTACGAGATCCTAAAGAACCCCGTATTGTTATTTATTGTCACTACCT 6721 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 6720 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCATCCTTGGATGTGGTAGCCGTT 6661 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||| ||| |||||| |||||||||||||| ||||||||| Sbjct 6660 TCTCAGGCTCCCTCTCCGGTGTCGTGCCCTAACACCCCGTTACCCGTTACCACCATGGTA 6601 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| |||||||||||||||||||||||||||||||||||||||||| ||||| || | Sbjct 6600 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATTCATCGTCGACG 6541 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCG---TT 297 || | ||| ||||||| |||||||||||||||||||||| | | | || || Sbjct 6540 TAAAGTCATACGATTCGAAAAGTTATTATGAATCACCAAGGGAATCGGTTGCCCGATATT 6481 Query 298 GGTTTTTTATCTAATAAATACA-CCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGC 355 |||||||||||||||||||||| |||||||| |||||||| | ||||||||||||||||| Sbjct 6480 GGTTTTTTATCTAATAAATACACCCCCTTCCAGAAGTCGGAGGTTTTAGCATGTATTAGC 6421 Query 356 TCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTT 415 ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 6420 TCTAGAATTACCACGGTTATCCAAGTAGTAAGGTACTATCAAATAAATTATAACTGATTT 6361 Query 416 AATGAGCCATTCGCAGTTTCA-CTGTATAGATTGCTTATACTTAGACATGCATGGCTTAA 474 ||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||| Sbjct 6360 AATGAGCCATTCGCAGTTTCACCTGTATAAACGATTTATACTTAGACATGCATGGCTTAA 6301 Query 475 TCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||| Sbjct 6300 TCTTTGAGACAAGCATATGACTACTGGCAG 6271 >seq384 Length=51119 Score = 659 bits (730), Expect = 0.0 Identities = 455/510 (89%), Gaps = 6/510 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| ||| || ||||| ||| |||| |||||||||||||||||| Sbjct 49644 GTACTCATTCCAATTACGAGATCCTAAAGAACCCCGTATTGTTATTTATTGTCACTACCT 49585 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 49584 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCATCCTTGGATGTGGTAGCCGTT 49525 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||| ||| |||||| |||||||||||||| ||||||||| Sbjct 49524 TCTCAGGCTCCCTCTCCGGTGTCGTGCCCTAACACCCCGTTACCCGTTACCACCATGGTA 49465 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| |||||||||||||||||||||||||||||||||||||||||| ||||| || | Sbjct 49464 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATTCATCGTCGACG 49405 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCG---TT 297 || | ||| ||||||| |||||||||||||||||||||| | | | || || Sbjct 49404 TAAAGTCATACGATTCGAAAAGTTATTATGAATCACCAAGGGAATCGGTTGCCCGATATT 49345 Query 298 GGTTTTTTATCTAATAAATACA-CCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGC 355 |||||||||||||||||||||| |||||||| |||||||| | ||||||||||||||||| Sbjct 49344 GGTTTTTTATCTAATAAATACACCCCCTTCCAGAAGTCGGAGGTTTTAGCATGTATTAGC 49285 Query 356 TCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTT 415 ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 49284 TCTAGAATTACCACGGTTATCCAAGTAGTAAGGTACTATCAAATAAATTATAACTGATTT 49225 Query 416 AATGAGCCATTCGCAGTTTCA-CTGTATAGATTGCTTATACTTAGACATGCATGGCTTAA 474 ||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||| Sbjct 49224 AATGAGCCATTCGCAGTTTCACCTGTATAAACGATTTATACTTAGACATGCATGGCTTAA 49165 Query 475 TCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||| Sbjct 49164 TCTTTGAGACAAGCATATGACTACTGGCAG 49135 >seq142 Length=80656 Score = 118 bits (130), Expect = 3e-24 Identities = 102/124 (82%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||||| | |||||||| | |||| ||| |||||||||||||| Sbjct 14963 TACTCATTCCAATTACAAAATCCAAAAGAAATC-GTATTGTTATCTATTGTCACTACCTT 14905 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 || ||||||||||||| ||||||| ||||| || |||||||| ||| ||||||||| Sbjct 14904 CC-GTGTCGGGATTGGATAATTTGTACGCCTTTCGCAATCCTTGGAAGTGATAGCCGTTT 14846 Query 122 CTCA 125 |||| Sbjct 14845 CTCA 14842 >seq638 Length=35396 Score = 114 bits (126), Expect = 4e-23 Identities = 104/130 (80%), Gaps = 12/130 (9%) Strand=Plus/Minus Query 2 TACTCATTCCAATTACAAGACCCAAAAGA----GCCCT--GTATCAGTATTTATTGTCAC 55 |||||||||||||||||||| ||||||| | | |||| ||||||||||||| Sbjct 28982 TACTCATTCCAATTACAAGATTCAAAAGAATATGTATTTAGTATTGTTATTTATTGTCAC 28923 Query 56 TACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG 115 |||||||||||||||||||||||||||||| | |||| || ||||||||| ||| Sbjct 28922 TACCTCCCCGTGTCGGGATTGGGTAATTTG------TACTGCAATCGTTGGATGTGATAG 28869 Query 116 CCGTTTCTCA 125 | |||||||| Sbjct 28868 CTGTTTCTCA 28859 >seq2377 Length=8780 Score = 100 bits (110), Expect = 9e-19 Identities = 55/55 (100%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 450 TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 55 >seq1321 Length=19388 Score = 100 bits (110), Expect = 9e-19 Identities = 55/55 (100%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 450 TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 55 >seq486 Length=62019 Score = 93.3 bits (102), Expect = 1e-16 Identities = 51/51 (100%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 454 ACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 51 >seq167 Length=90583 Score = 93.3 bits (102), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 6/136 (4%) Strand=Plus/Minus Query 218 ATTTGAATGAAC-CATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCAC 276 |||||||||| ||||| || | || | ||| ||||||| |||||||||||||||| Sbjct 59359 ATTTGAATGATTTCATCGTCGACGTAAAGTCATACGATTCGAAAAGTTATTATGAATCAT 59300 Query 277 CAAGGAGCCCCGAAGGGCG----TTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAG 331 |||| | || | | |||||||||||| ||||||||||||||||||| |||| Sbjct 59299 CAAGTGGAATCGGTTGCCCAATATTGGTTTTTTATTTAATAAATACACCCCTTCCAGAAG 59240 Query 332 TCGGGGTTTTTAGCAT 347 |||| ||||||||| Sbjct 59239 TCGGAAATTTTAGCAT 59224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510181354496