Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq889 161 6e-38 seq1008 123 1e-26 seq1138 82.4 4e-14 >seq889 Length=2049 Score = 161 bits (178), Expect = 6e-38 Identities = 106/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||||||||||||||||||| || || | | ||||||| Sbjct 319 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGACACATAAGATTGAGATCGCCC 260 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||| Sbjct 259 GATCCCTAGTCGGCATAGTTTACTGTTAAGACTACAACGGTATCTGATCGTTTTCGA 203 >seq1008 Length=69757 Score = 123 bits (136), Expect = 1e-26 Identities = 76/81 (94%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 37 CGAGTCAAAATGATAACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACG 96 |||||||||| ||||| ||| |||||||||||||||||||||||| ||||||||||||| Sbjct 63944 CGAGTCAAAAAAATAACGTCGTCCGATCCCTAGTCGGCATAGTTTATGGTTAAGACTACG 63885 Query 97 ACGGTATCTGATCGTCTTCGA 117 ||||||||||||||||||||| Sbjct 63884 ACGGTATCTGATCGTCTTCGA 63864 >seq1138 Length=53733 Score = 82.4 bits (90), Expect = 4e-14 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 32 CCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGA 91 |||| |||||||||| ||||| | | |||||||||||||||||||||||| |||||||| Sbjct 5212 CCGAACGAGTCAAAAAAATAACGTTGTCCGATCCCTAGTCGGCATAGTTTATGGTTAAGA 5271 Query 92 CTA 94 ||| Sbjct 5272 CTA 5274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278395004460