Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1008 333 1e-88 seq378 327 5e-87 seq889 172 2e-40 >seq1008 Length=69757 Score = 333 bits (368), Expect = 1e-88 Identities = 367/484 (76%), Gaps = 36/484 (7%) Strand=Plus/Plus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||||| || | || | ||||||||||||||||||||||||||| ||||||| ||| ||| Sbjct 65887 TGTGATGCGCTCTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTGAAT 65946 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 | | ||||||||||||||||||| |||||||||||||| ||||||| |||| |||||| Sbjct 65947 TCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGA 66006 Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202 |||||||||||||||||||||||||||| || ||||||||||| |||||||||| ||||| Sbjct 66007 TGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGCTGAAAGGGAAACGCTT 66066 Query 203 GCAACCAGACTTG-CCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCT-GCG 260 | | ||| | | | ||| |||| || | | | | | |||| ||| |||| | Sbjct 66067 GAAGTCAGTCGCGTCATTCAG-AACTCAGCCTGGCTTTTGCCTGGTGTACT-TTCTGGTT 66124 Query 261 GTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGG 320 | | |||||||||||| | | | | ||| ||||||| |||||||||| | ||||| | Sbjct 66125 GACGGGCCAGCATCAGTTTTGACCGCTGGAAAAAGGCCATGGGAATGTGG-CACCTTC-G 66182 Query 321 GGGGTGTTATAGCCCGGGGT----------------------GGAATGCGGCCCGCCT-- 356 || ||||||||||||| ||| ||| || || ||||| Sbjct 66183 GGTGTGTTATAGCCCGTGGTCATATACAGCGGTTGGGACTGAGGACCGCAGCACGCCTTT 66242 Query 357 -GGACTGAGGTCCGCGC----TCCGGC-TAGGATGCTGGCGTAATGGTTGTAAGCGGCCC 410 | || ||| ||| | || || ||||||||||||||||||| | ||| || ||| Sbjct 66243 ATGGTTGGGGTTCGCCCACATTCGTGCTTAGGATGCTGGCGTAATGGCTTTAAACGACCC 66302 Query 411 GTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGT 470 |||||| |||||||||||||||||||||||| |||||||||||||||| ||||||| Sbjct 66303 GTCTTGAAACACGGACCAAGGAGTCTAACATGCCTGCGAGTGTTTGGGTGGAAAACCCGA 66362 Query 471 GCGC 474 |||| Sbjct 66363 GCGC 66366 Score = 250 bits (276), Expect = 1e-63 Identities = 240/303 (79%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| | |||||| |||||||||||||||| | ||||||| ||||||| | ||||||| Sbjct 65061 TTCTAAGAGTCGGTTTGTTTGGGAATGCAGACCAAAATGGGTGGTAAATACCATCTAAAG 65120 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 |||||||||||| |||||||||||||| ||||||| |||| ||||||||||||| ||| Sbjct 65121 CTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACT 65180 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACT 213 ||| |||||||||| ||||| |||||||||||| |||||||| |||||| |||||| | Sbjct 65181 TTGAAAAGAGAGTT-AAAAGTACGTGAAATTGTCAAAAGGGAAACGCTTGAAACCAGTAT 65239 Query 214 TGCCCGCAGTTGCTCAACCGGCC--CCTCGGCCGGTGCACTCTTCTGCGGTCAGGCCAGC 271 ||| |||| | |||| || || | | || ||||||||| ||| | | || || | Sbjct 65240 TGCTTGCAGGTAATCAATCGTCCCTCTTGGGGCGGTGCACTTGCCTGTCGGCGGGTCAAC 65299 Query 272 ATCAGCTCGGGCGGTCGGAT-AAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGTGTTAT 330 ||||| | || | |||| ||| ||| | ||| |||||||| |||||||||||||| Sbjct 65300 ATCAGTTTGGTTCG--GGATAAAAAGCCAGGAGAAGGTGGCCCCTCTCGGGGGGTGTTAT 65357 Query 331 AGC 333 ||| Sbjct 65358 AGC 65360 Score = 181 bits (200), Expect = 4e-43 Identities = 160/198 (81%), Gaps = 5/198 (3%) Strand=Plus/Plus Query 379 TAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAA 438 ||||||| || || ||||||| ||| || ||||||||| ||||||||||||||||||||| Sbjct 65497 TAGGATGTTGACGAAATGGTTTTAAACGACCCGTCTTGAAACACGGACCAAGGAGTCTAA 65556 Query 439 CATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGG 498 ||| | ||||||||||||||| ||||||| | |||| ||||||||||||| ||||| | Sbjct 65557 CATACACGCGAGTGTTTGGGTGGCAAACCCTTACGCGAAATGAAAGTGAACTTAGGTGCG 65616 Query 499 AACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGC 558 | | |||||| ||||||||| || ||| | || ||| ||| ||||||||||| Sbjct 65617 ATC----TTCGGTGCAGCATCGACCGGTCTGGAT-TTTTTTGATAGATCTGAGTAAGAGC 65671 Query 559 ATAGCTGTTGGGACCCGA 576 | |||||||||||||| Sbjct 65672 GTGTCTGTTGGGACCCGA 65689 Score = 149 bits (164), Expect = 3e-33 Identities = 87/90 (97%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 594 CTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAA 653 ||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||| Sbjct 66377 CTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAA 66436 Query 654 ATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||||||||||||||||||||||||||| Sbjct 66437 ATCGATCGTCAAATTTGGGTATAGGGGCGA 66466 >seq378 Length=2903 Score = 327 bits (362), Expect = 5e-87 Identities = 255/301 (85%), Gaps = 5/301 (2%) Strand=Plus/Minus Query 379 TAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAA 438 ||||||| || || ||||||| ||| || |||||||| ||||||||||||||||||||| Sbjct 2860 TAGGATGTTGACGAAATGGTTTTAAACGATCCGTCTTGAAACACGGACCAAGGAGTCTAA 2801 Query 439 CATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGG 498 ||| | ||| ||||||||||| |||||| |||| ||||||||||||| ||||| | Sbjct 2800 CATACACGCGCGTGTTTGGGTGGCAAACCGTCACGCGAAATGAAAGTGAACTTAGGTGCG 2741 Query 499 AACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGC 558 | | | |||||| ||||||||| || ||| | || | || ||| ||||||||||| Sbjct 2740 --CTCTTC--GGTGCAGCATCGACCGGTCTGGATTTTTTTG-ATAGATCTGAGTAAGAGC 2686 Query 559 ATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAA 618 | ||||||||||||||||||||||||||||||| |||||||||||||||||||||| | Sbjct 2685 GTGTCTGTTGGGACCCGAAAGATGGTGAACTATGCATGAATAGGGTGAAGCCAGAGGACA 2626 Query 619 CTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGG 678 |||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||| Sbjct 2625 CTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG 2566 Query 679 G 679 | Sbjct 2565 G 2565 >seq889 Length=2049 Score = 172 bits (190), Expect = 2e-40 Identities = 151/186 (81%), Gaps = 3/186 (2%) Strand=Plus/Plus Query 68 AAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGT 127 ||||||| |||||| | ||||||||||||||||||| | |||||||||||| |||||| Sbjct 1865 AAATGGGTGGTAAACACCATCTAAAGCTAAATATTGGCGAAAGACCGATAGCGAACAAGT 1924 Query 128 AGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTT 187 | |||| ||||||||||||| |||||| |||||||||| ||||| |||||| ||||| Sbjct 1925 ACCGTGAGGGAAAGATGAAAAGAACTTTGAAAAGAGAGTT-AAAAGTACGTGAGATTGTC 1983 Query 188 GAAAGGGAAGCGCTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGCC--CCTCGGCCG 245 |||||||| |||||| |||||| |||| |||| | |||| || || | | || || Sbjct 1984 AAAAGGGAAACGCTTGAAACCAGTATTGCTTGCAGGTAATCAATCGTCCCTCTTGGGGCG 2043 Query 246 GTGCAC 251 |||||| Sbjct 2044 GTGCAC 2049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079958944700