Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1008 325 6e-87 seq889 203 5e-50 seq871 181 2e-43 seq944 82.4 1e-13 >seq1008 Length=69757 Score = 325 bits (360), Expect = 6e-87 Identities = 227/258 (88%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||| | || || | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 59860 TACTTGCTGCCTTCATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 59801 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||||| | | | | ||||||||||||||||| | Sbjct 59800 ACCTGTTATTGCCTCAAACTTCCATGGATTAAACATCCATAGTCCCTCTAAGAAGTTAAA 59741 Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 || | |||| ||| | | |||||||||||||||||||||||||||||| |||||||| Sbjct 59740 CATCCACCAAAGTGAACGTAACTATTTAGCAGGTTAAGGTCTCGTTCGTTAACGGAATTA 59681 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | Sbjct 59680 ACCAGACAAATCACTCCACCTACTAAGAACGGCCATGCACCACCACCCATAGAATCAAAA 59621 Query 241 AAGAGCTATCAATCTGTC 258 ||||||| |||||||||| Sbjct 59620 AAGAGCTCTCAATCTGTC 59603 >seq889 Length=2049 Score = 203 bits (224), Expect = 5e-50 Identities = 115/117 (98%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 563 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 504 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 503 ACTAAGAACGGCCATGCACCACCACCCATAAAATCATGAAAGAGCTATCAATCTGTC 447 >seq871 Length=70598 Score = 181 bits (200), Expect = 2e-43 Identities = 139/164 (85%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 73 CTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAG 132 ||||||||||||| | | | | ||||||||||||||||| | || | |||| || Sbjct 10950 CTCAAACTTCCATGGATTAAACATCCATAGTCCCTCTAAGAAGTTAAACATCCACCAAAG 11009 Query 133 TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 192 | | | |||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 11010 TGAACGTAACTATTTAGCAGGTTAAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATC 11069 Query 193 ACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATC 236 |||||||||||||||||||||||| |||||||||||||||||| Sbjct 11070 ACTCCACCAACTAAGAACGGCCAT--ACCACCACCCATAGAATC 11111 >seq944 Length=15054 Score = 82.4 bits (90), Expect = 1e-13 Identities = 67/80 (84%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 38 CAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAA-GC 96 |||||||||||||||||||| |||||||||||||||||||||||| || | || Sbjct 9591 CAGAACATCTAAGGGCATCAGCGACCTGTTATTGCCTCAAACTTCCCACGGATTAAACAT 9532 Query 97 CAATAGTCCCTCTAAGAAGC 116 | ||||||||||||| |||| Sbjct 9531 CCATAGTCCCTCTAATAAGC 9512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796785225834