Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq1008 154 2e-35 seq889 93.3 5e-17 >seq1008 Length=69757 Score = 154 bits (170), Expect = 2e-35 Identities = 126/149 (85%), Gaps = 3/149 (2%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| || | |||||||||||||||||||||||||||||||| Sbjct 63720 CTAGAAACCAACAAAATAGA-ACCAAAGTCCTATTCTATTATTCCATGCTAATGTATTCA 63662 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 ||||||||||||||| |||||||||||||| |||| ||||||||||||| ||| | | Sbjct 63661 AGCGTAAGCCTGCTTTAAACACTCTAATTTTTTCAAAGTAAAAGTCCTGGATCCCCAACG 63602 Query 126 CAC-CAATGAAG-GCATACGGGCTCACCA 152 ||| || | ||| ||| | ||||| ||| Sbjct 63601 CACTCAGTTAAGAGCACGCTGGCTCCCCA 63573 >seq889 Length=2049 Score = 93.3 bits (102), Expect = 5e-17 Identities = 59/64 (92%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 1 CGTCTCTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGT 60 || ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| Sbjct 64 CGACTCTAGAAACCAACAAAATAGAACCGCACGTCCTATTTTATTATTCCATGCTAATGT 5 Query 61 ATTC 64 |||| Sbjct 4 ATTC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595188963876