Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq1008 352 5e-95 seq889 244 2e-62 seq944 93.3 8e-17 >seq1008 Length=69757 Score = 352 bits (390), Expect = 5e-95 Identities = 266/311 (86%), Gaps = 3/311 (1%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||| | | | |||||| || | |||||||| Sbjct 59694 GAACGAGACCTTAACCTGCTAAATAGTTACGTTCACTTTGGTGGATGTTTAACTTCTTAG 59753 Query 80 AGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 137 ||||||||| | | | || || ||||||||||||||||||||||||||||||||||||| Sbjct 59754 AGGGACTATGGATGTTTAATCC-ATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 59812 Query 138 TAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGC 197 ||||||||||||||||||||||||||||||||| || || | ||| |||||||||| Sbjct 59813 TAGATGTTCTGGGCCGCACGCGCGCTACACTGATGAAGGCAGCAAGTAATTCACCTTGGC 59872 Query 198 CGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTAT 257 |||||||||||||||||||| | ||||| ||||||||||||||| | |||||||||| Sbjct 59873 CGGAAGGTCTGGGTAATCTTCTGAAACTTCATCGTGCTGGGGATAGTCCTTTGCAATTAT 59932 Query 258 TGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCC 317 || |||||||||||||| ||||||||||| | ||||||||| ||||||||||||||||| Sbjct 59933 TGGACTTCAACGAGGAATTCCTAGTAAGCGTGAGTCATCAGCTCGCGTTGATTACGTCCC 59992 Query 318 TGCCCTTTGTA 328 ||||||||||| Sbjct 59993 TGCCCTTTGTA 60003 >seq889 Length=2049 Score = 244 bits (270), Expect = 2e-62 Identities = 150/160 (94%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 169 GACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTG 228 |||||||||| |||||| | ||||||||||||||||||||||||||||| |||||||| Sbjct 697 GACAGAGCCAGCGAGTTTTTTTCCTTGGCCGGAAGGTCTGGGTAATCTTGTGAAACTCTG 756 Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 757 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATTCCTAGTAAGCGT 816 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||||||| |||||||||||||||||||||||||||| Sbjct 817 GAGTCATCAGCTCGCGTTGATTACGTCCCTGCCCTTTGTA 856 >seq944 Length=15054 Score = 93.3 bits (102), Expect = 8e-17 Identities = 69/80 (86%), Gaps = 2/80 (3%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||| ||||||||||||| | | | || ||| |||||||||||||||||||||||| Sbjct 9512 GCTTATTAGAGGGACTATGGATGTTTAATCCGTGGGAAGTTTGAGGCAATAACAGGTCGC 9571 Query 129 TGATGCCCTTAGATGTTCTG 148 |||||||||||||||||||| Sbjct 9572 TGATGCCCTTAGATGTTCTG 9591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947181870592