Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq972 168 5e-37 seq1051 129 5e-25 seq1026 111 1e-19 >seq972 Length=266462 Score = 168 bits (186), Expect = 5e-37 Identities = 345/513 (67%), Gaps = 0/513 (0%) Strand=Plus/Minus Query 66428 TCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCG 66487 ||||||| || |||||||| || |||| || || || || | || || || Sbjct 234424 TCAAAGACATCCGCATGCCAAGGCTCCAAATAAATAGCAAAAGCACCAGGCCGCTTATTC 234365 Query 66488 CCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCG 66547 ||||| ||||| || || || || ||||||| | || | |||||| || || | |||| Sbjct 234364 CCACCCTGGTCAACATACCGCGCAGTATTGTTGTATACCCTCAACATGGGCACAATCCCG 234305 Query 66548 TTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTC 66607 || || | || || ||||| | ||| ||||| || || || | || ||||| Sbjct 234304 TTGGAGTACCCGTTCGTGCCAGCAATGTACGATCCCAAAGCGCGAATCTTATGCACATTA 234245 Query 66608 AGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATG 66667 | ||| ||||| || || || || ||||| || ||| || || | | ||| Sbjct 234244 ATACCGATACCGCCAGCGGTTTTGGAGATCATCGCGCAAGTTTTCAGAGTTTCGTAAATG 234185 Query 66668 CCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGT 66727 ||||| |||||||| |||| || || || | | | || || ||||| || | || Sbjct 234184 CCGTCGATGGAGTCGTCCTTCATCGTGAGCAAGAAACAGGAGGAGAGTTGCGGGTGAGGG 234125 Query 66728 GTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTG 66787 ||| |||| |||||||||||||| ||||| || ||||| | |||||| | | Sbjct 234124 GTGCCGGCATTGAAGAGGGTGGGTGATGCGTGGGTGAAGTACTTTTCGGACATGAGTTCG 234065 Query 66788 TACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGG 66847 || || |||||| | ||||| | || || |||||||| |||| ||| ||||| || Sbjct 234064 TATGTTTCGATGGCGGCATCTACGTCGTCACCATGAATACCGACAGCAACACGCATGAGC 234005 Query 66848 AGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGG 66907 | || ||||||| ||| | | | | ||||| | | | |||||||||||| ||| Sbjct 234004 ATGTGCTGAGGCCTTTCTGCGATCTTGTTGTTGATGCGGAGGAGGTAGGAGCGTTCGAGG 233945 Query 66908 GTCTTGATACCAAAGTACGAGTAATTGAAATCG 66940 ||||||| || ||||| ||| ||||| ||| Sbjct 233944 GTCTTGAAGCCGAAGTAGTTGTAGTTGAAGTCG 233912 Score = 114 bits (126), Expect = 1e-20 Identities = 432/669 (65%), Gaps = 14/669 (2%) Strand=Plus/Minus Query 65240 CCACGATCTGCAGCCATGTCAATGATACGACGTCCCGAT--ATCTCCCAGACGGTCTTGT 65297 || || || |||||||| ||||| ||| || | | || |||||||| || ||||| | Sbjct 235847 CCGCGCTCAGCAGCCATATCAATAATA--ACCTTCTGACTAATCTCCCAAACAGTCTTAT 235790 Query 65298 ACAGGCGACGTACCTCAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAA 65357 | | | | ||| ||||||||| ||| ||| || || | |||| Sbjct 235789 AAATCCTCTTCAACTCCTCCGGAATCTCCCGAATCCTCTGAACACTCCCCCCCTCCGCAA 235730 Query 65358 TAATGCGATTACGCATCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGT 65417 |||| || || |||| || ||||||| ||| || | | || || | ||| | Sbjct 235729 TAATCCGGTTCTTCATCTTATCATCCCACAAATTCAACTCCGTCAAATCTTTCAACAAAT 235670 Query 65418 GACGATTGATGACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGA 65477 | |||| | | ||||| || ||| || ||| || ||| ||||||||||||||| Sbjct 235669 GCTGATTCACAATCTGGAATTCACCGCTCAATACCCGCCGGGTGTAGATGTTGGACGTGT 235610 Query 65478 TGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAG 65537 |||||| ||| |||| |||||||||| ||||| | || || || || |||||||| | Sbjct 235609 AGGGTTCGAAGCATTCGTTGTTGCCTAGGATTTGCGAGGTGGAGGCGGTCGGCATGGGTG 235550 Query 65538 CGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGTGA-CGCAATTCGTCCCAG 65596 |||| | | ||||| | | |||| | | || ||| || || | |||| ||||| Sbjct 235549 CGACGAGGAGGGAGTTCCTGATACCGTGTTTGGCGAT-TTGGGATCGGAGTTCGGCCCAG 235491 Query 65597 TTCCACATCGGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATA 65656 | | ||||||| ||| | ||| |||||| || |||| ||| || | Sbjct 235490 T--CCCATCGGTCCGAGGTC----TTGACGTTCCACATGTCTGGTTGGAGGACACCCTTG 235437 Query 65657 CTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCT-TGGCAAGTTGACAGCT 65715 ||| | || || || | || ||| || |||| || | ||| | | || Sbjct 235436 CTGACAGGGCTTCCCTCATAAGTTTCATACGTCCCTTCCTTCTGAGCCAACTCGCAAGAA 235377 Query 65716 GGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTC 65775 | | || || || ||||| || || ||||| ||| || || || | ||| ||||| Sbjct 235376 GCT-TCAAGGGCAGCAAAGTACATCGTCTCACTGATGTCGCGGTTGAGCTGACGGGCCTC 235318 Query 65776 ATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAAT 65835 | ||| | ||||| | |||| | |||| |||||| |||||||| || || | Sbjct 235317 TTGCGAATCGAAGGGCATGCGCATCTTAATGAAAGCGTCGGCAAGACCTTGGACGCCCAG 235258 Query 65836 ACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGAT 65895 ||||||||| || || |||| || || | || || || || |||||||| ||||| Sbjct 235257 ACCGATGGGGCGGTGGCGCATGTTCGACTTGCGGGCTTCGGGGACCGGGTAGTAGTTGAT 235198 Query 65896 ATCGATAAT 65904 || || || Sbjct 235197 GTCAATGAT 235189 >seq1051 Length=30516 Score = 129 bits (142), Expect = 5e-25 Identities = 247/360 (69%), Gaps = 8/360 (2%) Strand=Plus/Minus Query 61213 GCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAG 61272 || |||||||||| | || || ||||||||||| ||||||||||| | ||| | Sbjct 9998 GCTTTCTTTGCCGGAGCCGATGGCATCGTCAATGAATATTTATTGGAAAGATTCTCAAGA 9939 Query 61273 GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT--G 61330 ||||| ||| || || || ||||| |||| |||||| || || | | ||| | Sbjct 9938 GAGGTCCAATGCTCCGAAGCCAAGTGTTTTTACGCCTTCCAAATGGCG--GCACAATCAG 9881 Query 61331 TCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTG 61390 | || || ||| | ||||| | | |||||| | ||||| || | || ||||| Sbjct 9880 TTCATTCCGAGGTTTACAGCATGTTGATCGATGCTTACATAGATGACCCGGAGGAACAGA 9821 Query 61391 AACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCT 61450 ||| |||||||| || || ||| | || | | || ||| ||||||||||| Sbjct 9820 GACGTTTGTTCAACGCGATAGAGGAAAACCCATCCATCAAAAAGAAGGCGGATTGGGCGA 9761 Query 61451 TCAATTGGATCACCAGTA--CAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGT 61508 || |||||| |||| |||| |||||||| | ||| | || |||| ||||| | Sbjct 9760 AAAAGTGGATC--CAGTCTCCAACAGCTACATTCGCCGAAGGTCTGGTGGCGTTTGCTGC 9703 Query 61509 GGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGG 61568 | ||||| || || ||| || || |||||||||||||||||||||| ||| || || Sbjct 9702 AATTGAGGGCGTCTTCTTCTCAGGGTCATTTGCCGCAATCTTTTGGTTGAGGAAGCGAGG 9643 >seq1026 Length=25707 Score = 111 bits (122), Expect = 1e-19 Identities = 284/429 (66%), Gaps = 15/429 (3%) Strand=Plus/Minus Query 61510 GTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGA 61569 || |||||| | || ||| || || ||||| | ||||| ||| ||||||| || || Sbjct 12779 GTTGAGGGTATCTTCTTCTCCGGCTCCTTTGCTTCCATCTTCTGGCTGAAGAAGCGAGGC 12720 Query 61570 CTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGT 61629 | |||||||| || || ||| ||| || | || || || ||||| ||| | || || Sbjct 12719 ATGATGCCCGGCCTCACTTTCTCCAACGAACTCATCTCCCGTGACGAAGGCCTCCACTGC 12660 Query 61630 GATTTTGCTGTTTTGCTATTCA---AACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGT 61686 ||||||||| | || |||| ||| | | | || | ||| | | || Sbjct 12659 GATTTTGCTTGCCTCCTCTTCACACAACTCAACC-----AAAAGCCCG-CTCATGAAACC 12606 Query 61687 GTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTG 61746 || | || | || ||||| |||||||| ||||| || || |||||| | Sbjct 12605 GTTCTCCAAATCATCACCGAAGCGGTGGGCATCGAACAAGAATTCCTCACCGACGCTCTC 12546 Query 61747 CCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCC 61806 ||||| | |||||||||||||| | | || |||| | ||| || || || || || Sbjct 12545 CCCGTTGCCCTCATCGGCATGAACTCCGTCCTCATGTGCCGGTACATCGAGTTCGTCGCT 12486 Query 61807 GACCGTCTGTTGGTCGATTTGGGTAT---GAAGCGGATCTATAATACGAAAAACCCATTT 61863 |||||||| | |||| ||||| | |||| ||| || | |||| || ||| Sbjct 12485 GACCGTCTCCTCGTCGCCTTGGGATTCCCCAAGC---ACTACAACGCCGAAAATCCCTTT 12429 Query 61864 GATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGC 61923 || |||||||| ||||||| || | |||||||| || || || ||||| || || Sbjct 12428 GACTTCATGGAGTTGATTTCCTTGCAGGGCAAGACCAACTTCTTTGAGAAGAAGGTCGGG 12369 Query 61924 GACTATCAA 61932 || |||||| Sbjct 12368 GAGTATCAA 12360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397558725980960