Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20delemar_20[genbank_20GCA_5F000697155.1_202014-06-02] 3,921 sequences; 42,018,333 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3799 237 1e-57 seq2503 174 1e-38 seq3792 168 5e-37 seq3903 84.2 2e-11 >seq3799 Length=82858 Score = 237 bits (262), Expect = 1e-57 Identities = 625/949 (66%), Gaps = 4/949 (0%) Strand=Plus/Minus Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052 ||||| |||| | || | ||| || | ||| || ||||| | || || || ||| Sbjct 43816 ACAAAAGTGGGTAAAGCGATAGAAGCCAAGTTACAAACAGCAACTTCATCGGGGCTTGTA 43757 Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112 || ||||||||||| || || || ||||| || ||||| ||||| || ||||| || Sbjct 43756 TATTCGACAATTTCCGTACAAAGGTTACTACATTTAATGGTACCCAAGTTTTGTTGGTTG 43697 Query 66113 CTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGAC 66172 ||||| | ||| || ||||||||||| | ||| |||| | ||||| ||| ||| | Sbjct 43696 CTCTTTCTATTACAAGCATCCTTGTAGAGCATAAACGGGTTACCGGTTTCAGTTTGTGCT 43637 Query 66173 TCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGT 66232 || | ||| || | ||| | ||||||| | || | ||| || |||| |||| Sbjct 43636 TCCAAGATAGCATACCATAACTTTTGTGCCTTAATTGTCTCTCTCGCTCTTCCTTCGCGT 43577 Query 66233 TCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACAC 66292 || || ||| || || | | || |||||||| || || || || || Sbjct 43576 TCATAGCTTTCATAAAGAGCTACAAACTCATCACCCCAAACATCTTGCAAACCAGGTGCT 43517 Query 66293 TTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCA 66352 | | ||||| | || |||||||| ||| | | | ||||| |||| || ||||| Sbjct 43516 TCATTAGGACAAAAGAGAGACCAATCCCCACCGTCCTTGACACGTTGCATGAAGAGATCG 43457 Query 66353 GGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTG 66412 |||| ||| ||||| || || | ||| || |||| || || | || || || Sbjct 43456 GGTACCCAAAGGGCATAAAACAAATCACGGGCTCTGATTTCATCCTTACCAAAGTTCTTT 43397 Query 66413 CGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAG 66472 | || || | || |||||| || ||||||||||| || || || |||||||| | Sbjct 43396 CTTAAATCTAAAAAGGTAAAGATATCCGCATGCCATGGCTCAAGATACATGGCGAAGGCT 43337 Query 66473 CCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAAC 66532 ||| ||| ||| ||||||||| ||||| || || || || ||||| ||||||| | Sbjct 43336 CCCGGACGCTTGTTGCCACCTTGATCGACATAACGTGCTGTGTTATTGAACACACGCAGC 43277 Query 66533 ATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGT 66592 || || | | || || || | ||||| || ||| | || |||||| || || Sbjct 43276 ATGGGAAGCAAACCATTCGAATAACCATTTGTACCGGCAATATAGGATCCATTGGCACGA 43217 Query 66593 ATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCC 66652 |||| ||||| || ||||| |||||||| || || ||||| || ||||| Sbjct 43216 ATATTGTGAATGTTGAGACCGATACCACCTGCAGTTTTCGAAATTTGGGCACAGATTTTT 43157 Query 66653 ACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTA 66712 | ||| | ||||| ||||| || || |||| ||||| || | | |||| || Sbjct 43156 AATGTTTCATAGATGCCTTCAATTGAATCTTCCTTCATGGTGAGCAAGAAGCAAGAGGAC 43097 Query 66713 AGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGG 66772 | || || ||||| |||| ||| | ||||| | || || |||||| | | Sbjct 43096 ATCTGAGGACGAGGTGTACCGGCATTGAACAAAGTGGGACTGGCATGAGTAAAGAATTTC 43037 Query 66773 CGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGT 66832 |||||| | ||||| ||||| || |||| ||||| | ||| || || || || | Sbjct 43036 TCAGACATCAAGTTGTAAGTCTCAATTGCAGCGTCAATATCTTCACCGTGGATACCAATA 42977 Query 66833 GC-ACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCC-TTGATATGCATTA 66890 || ||| ||||| | || | |||||| || ||| ||| | || | || | | || Sbjct 42976 GCGACA-CGCATGATAAGATGTTGAGGACGCTCG-GCAGTCTTGCCGTCAATCTTGAGTA 42919 Query 66891 AGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATC 66939 ||||| ||||| || ||||||| ||||| | ||| |||||||| Sbjct 42918 GATAGGATCGTTCGAGAGTCTTGAATCCAAAAAAGTTGTACTTGAAATC 42870 >seq2503 Length=34491 Score = 174 bits (192), Expect = 1e-38 Identities = 355/518 (69%), Gaps = 12/518 (2%) Strand=Plus/Minus Query 61429 AAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAA 61488 ||||| || || |||||||| ||||| |||||| | | ||||| | | |||| |||| Sbjct 7329 AAGCGTAAGGCCGATTGGGCTTTCAAATGGATCTCA--TCCAACGAATCC-TTTGCTGAA 7273 Query 61489 CGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATC 61548 || || | || ||||| | ||||| || | || || || || || ||| | ||| Sbjct 7272 CGTCTGGTCGCCTTTGCCGCTGTCGAAGGCATCTTCTTTTCCGGTTCATTCGCCTCCATC 7213 Query 61549 TTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCA 61608 |||||||| ||||||||||| | ||||||||| |||| ||||| ||||| ||||| | Sbjct 7212 TTTTGGTTAAAGAAACGTGGTTTGATGCCCGGTTTGACGTTCAGTAATGAATTGATCTGT 7153 Query 61609 CGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAAT 61668 || ||||| || | || |||||||| | | | |||| | | ||| | || Sbjct 7152 CGTGACGAAGGTCTTCACACCGATTTTGCCTGTCTCTTGTTCACCCAC-ATCCG--CAAA 7096 Query 61669 CGTCC--GTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGG 61726 | || ||| | | || || || ||| || || || || ||||||||| | Sbjct 7095 CAACCCAGTC--AACAACGCGTCAAGGACATTATTGTAGAAGCAGTCGGTATCGAACAAG 7038 Query 61727 AATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGC 61786 |||| ||| | || ||| |||| || || | ||||| ||||| | | |||| | Sbjct 7037 AATTCCTGTCGGATGCTCTGCCTGTGGCATTGATCGGTATGAACGCTACCTTGATGTGTC 6978 Query 61787 AGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCG-ATTTGGGTATGAAGCGGATCTAT 61845 |||| |||||||| || || || ||||| |||||| |||| | || | ||| || Sbjct 6977 AGTACATTGAATTCGTCGCTGATCGTCTCATGGTCGCCCTTGGCTTTG-ACAAGATTTAC 6919 Query 61846 AATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTT 61905 ||| | |||||||| || || ||||||||||| || || | |||||||| || ||| Sbjct 6918 AATGCCTCTAACCCATTCGACTTTATGGACATGATCTCCCTTCAAGGCAAGACCAACTTT 6859 Query 61906 TTCGAGAAACGTGTAGGCGACTATCAACGTTTGGGTGT 61943 || || || ||||| || ||||||||| ||||| Sbjct 6858 TTTGAAAAGCGTGTTTCTGATTATCAACGTGCTGGTGT 6821 >seq3792 Length=31585 Score = 168 bits (186), Expect = 5e-37 Identities = 352/519 (68%), Gaps = 14/519 (3%) Strand=Plus/Minus Query 61429 AAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAA 61488 ||||| || || || ||||| ||||| ||||| | | | | | | |||||| ||| Sbjct 7033 AAGCGTAAGGCTGACTGGGCTTTCAAATGGATTTC---TGCTAATGATTCATTTGCTGAG 6977 Query 61489 CGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATC 61548 || | | || ||||| | || || ||| |||| || ||| || |||||| | ||| Sbjct 6976 CGTCTTGTTGCTTTTGCTGCAGTAGAAGGTATATTCTTTTCTGGCTCATTTGCCTCTATC 6917 Query 61549 TTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCA 61608 |||||| | ||||||||||| | ||||||||| |||| || || ||||| ||||| | Sbjct 6916 TTTTGGCTTAAGAAACGTGGTTTGATGCCCGGTTTGACTTTTAGTAATGAATTGATTTGT 6857 Query 61609 CGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAAT 61668 || ||||| || | ||| ||||||||| | | | || | | | || || || Sbjct 6856 CGTGACGAAGGTCTTCATACGGATTTTGCTTGTCTTTTGTTTACTCACATTC--GTAAA- 6800 Query 61669 CGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAA 61728 | || | | |||||| || ||| | || || ||| ||| ||||||||| Sbjct 6799 CAACCTAGCCAACAACGTGTGAAGGATATTATAATGGAAGCTGTAGGTATTGAACAGGAA 6740 Query 61729 TTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAG 61788 || | ||||| || || || || || | || || ||||||| | | |||| || Sbjct 6739 TTCTTAACTGATGCATTACCTGTTGCATTGATTGGTATGAATTCTACTTTGATGTGTCAA 6680 Query 61789 TATATTGAATTTGTTGCCGACCGTCTGTTGGTCGAT-TTGGGT---ATGAAGCGGATCTA 61844 || |||||||||||||| || ||||| |||| | | |||||| || || || || Sbjct 6679 TACATTGAATTTGTTGCTGATCGTCTTATGGTTGCTCTTGGGTTCGATAAA----ATTTA 6624 Query 61845 TAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTT 61904 || | | || || ||||| || |||||||||||||| ||| | || ||||| || || Sbjct 6623 TATGGCAACGAATCCGTTTGACTTTATGGACATGATTTCACTGCAAGGGAAGACCAACTT 6564 Query 61905 TTTCGAGAAACGTGTAGGCGACTATCAACGTTTGGGTGT 61943 ||| || || ||||| || ||||| ||| ||||| Sbjct 6563 TTTTGAAAAGCGTGTTTCTGATTATCAGCGTGCTGGTGT 6525 >seq3903 Length=141833 Score = 84.2 bits (92), Expect = 2e-11 Identities = 132/187 (71%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 65116 CCTAAGATAGTACATGCCGGTCTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGA 65175 ||| | |||||||||||| ||||| | || |||||||||||||||||| || | Sbjct 12126 CCTCAAATAGTACATGCCCGTCTTTAATCCTTTCTTCCAAGCATAGAAATGCATAGAAGT 12067 Query 65176 TAATTTTGCATAATTCGGCTCGGCCACATGCATA--TTCAACGACTGACTCTGATCGATG 65233 || ||| | || | || ||||| || ||| |||| ||| ||| |||||| || Sbjct 12066 CAACTTTCCGAAACTAGGTTCGGC--AGTGAATAAGTTCATCGATTGAGACTGATCAATA 12009 Query 65234 TAACGACCACGATCTGCAGCCATGTCAATGATACGACGTCCCGATATCTCCCAGACGGTC 65293 || |||||| || || ||||| ||||| || | | ||| || ||||| || ||| Sbjct 12008 TAGGCACCACGGTCAGCTGCCATATCAATAATGGTTCTTTGCGAAATTTCCCACACAGTC 11949 Query 65294 TTGTACA 65300 ||||||| Sbjct 11948 TTGTACA 11942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397549001343440