Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq573 87.8 4e-15 seq73 73.4 1e-10 >seq573 Length=30247 Score = 87.8 bits (96), Expect = 4e-15 Identities = 121/167 (72%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 166 CTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAG 225 |||||||| | | || || |||| ||| | |||| | |||||| || ||| || | Sbjct 28994 CTAGAGTGTAATGGAGGAAAAAGGAACTCCGAAAGTAGGGATGAAATCTGTTGATCTTCG 29053 Query 226 GAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTA-ACTGACACTGAGGCTCGAAAG 284 || || | | ||||||||| || || ||| | |||||| |||||| |||||| Sbjct 29054 GAAGACCGCTTAAGGCGAAGGCTTTTTTCTA-ACTAAACACTGACGCTGAGGTACGAAAG 29112 Query 285 CGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAA 331 ||||||||||| ||||||||||||| |||||||| ||||||| Sbjct 29113 TATGGGGAGCAAAACGGATTAGATACCCGTGTAGTCCATACCGTAAA 29159 >seq73 Length=100076 Score = 73.4 bits (80), Expect = 1e-10 Identities = 61/75 (81%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323 |||||| |||||| |||||| ||||| ||| | |||||||||||| |||||||| Sbjct 19116 ACTGACGCTGAGGTACGAAAGTATGGGGTGCACAACGGATTAGATACCAGAGTAGTCCAT 19057 Query 324 GCCGTAAACGATGAA 338 |||||||||||||| Sbjct 19056 ACCGTAAACGATGAA 19042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203181302272