Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20oryzae_20[genbank_20GCA_5F000697195.1_202014-06-02] 4,566 sequences; 42,900,422 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2389 224 8e-54 seq4556 181 8e-41 seq3946 125 6e-24 seq2429 86.0 5e-12 >seq2389 Length=30206 Score = 224 bits (248), Expect = 8e-54 Identities = 620/948 (65%), Gaps = 2/948 (0%) Strand=Plus/Plus Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052 ||||| |||| | |||| ||| || | ||| || ||||| | || || ||| ||| Sbjct 12401 ACAAAAGTGGGTAAAGCAATAGAAGCCAAGTTACAAACAGCAACTTCATCGGGACTTGTA 12460 Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112 || ||||||||||| || || || ||||| || ||||| ||||| || || ||||| Sbjct 12461 TATTCGACAATTTCCGTACAAAGGTTACTACATTTAATGGTACCCAAGTTTTGCTGATTG 12520 Query 66113 CTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGAC 66172 ||||| | ||| || ||||||||||| | ||| | ||| | ||||| ||| ||| | Sbjct 12521 CTCTTTCTATTACAAGCATCCTTGTAGAGCATAAATGGATTACCGGTTTCAGTTTGTGCT 12580 Query 66173 TCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGT 66232 || | ||| || | ||| | ||||||| | || | ||| || |||| |||| Sbjct 12581 TCCAAGATAGCATACCATAACTTTTGTGCCTTAATTGTCTCTCTCGCTCTTCCTTCGCGT 12640 Query 66233 TCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACAC 66292 || || ||| || || | || |||||||| || || || || || Sbjct 12641 TCATAGCTTTCATAAAGAGCCACAAACTCATCACCCCAAACATCTTGCAAACCAGGTGCT 12700 Query 66293 TTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCA 66352 | | ||||| | || |||||||| ||| | | | ||||| |||| || ||||| Sbjct 12701 TCATTAGGACAAAAGAGAGACCAATCTCCACCGTCCTTGACACGTTGCATGAAGAGATCG 12760 Query 66353 GGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTG 66412 |||| ||| ||||| || || | ||| || |||| || || | || || || Sbjct 12761 GGTACCCAAAGGGCATAAAACAAATCACGGGCTCTGATTTCATCCTTACCAAAGTTCTTT 12820 Query 66413 CGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAG 66472 | || || | || |||||| || ||||||||||| || || || ||||| || | Sbjct 12821 CTTAAATCTAAAAAGGTAAAGATATCAGCATGCCATGGCTCGAGATACATGGCAAAGGCT 12880 Query 66473 CCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAAC 66532 || ||| ||| ||| ||||| ||||| || || || || ||||| ||||||||| Sbjct 12881 CCTGGACGCTTGTTGCCGCCTTGATCGACATAACGTGCTGTGTTATTGAATACACGCAAC 12940 Query 66533 ATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGT 66592 || || | | ||||| || | ||||| || ||| | || |||||| || || Sbjct 12941 ATGGGAAGCAAACCGTTCGAATAACCATTTGTACCGGCAATATAGGATCCATTGGCACGA 13000 Query 66593 ATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCC 66652 |||| |||| || ||||| |||||||| || || ||||| || ||||| Sbjct 13001 ATATTATGAATGTTGAGACCGATACCACCTGCAGTTTTCGAAATTTGGGCACAGATTTTT 13060 Query 66653 ACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTA 66712 | ||| | ||||| ||||| || || |||| ||||| || | | |||| || Sbjct 13061 AATGTTTCATAGATGCCTTCAATTGAATCTTCCTTCATGGTGAGCAAGAAGCAAGAGGAC 13120 Query 66713 AGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGG 66772 | || || ||||| |||| ||| | || || | || || |||||| | | Sbjct 13121 ATCTGAGGACGAGGTGTACCGGCATTGAACAAAGTAGGACTGGCATGAGTAAAGAATTTC 13180 Query 66773 CGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGT 66832 ||||| | ||||| |||||||| |||| ||||| | ||| || || || || | Sbjct 13181 TCGGACATCAAGTTGTAAGTCTCGATTGCAGCGTCAATATCTTCACCGTGGATACCAATG 13240 Query 66833 GC-ACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAA 66891 || ||| ||||| | || | |||||| || ||| | | | | || | | || Sbjct 13241 GCGACA-CGCATGATAAGATGTTGAGGACGCTCGGCGGTCTTGCCGTCAATCTTGAGTAG 13299 Query 66892 GTAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATC 66939 ||||| ||||| || ||||||| ||||| | ||| |||||||| Sbjct 13300 ATAGGATCGTTCAAGAGTCTTGAATCCAAAAAAGTTGTATTTGAAATC 13347 >seq4556 Length=51470 Score = 181 bits (200), Expect = 8e-41 Identities = 354/516 (69%), Gaps = 8/516 (2%) Strand=Plus/Minus Query 61429 AAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAA 61488 ||||| || || |||||||||||||| |||||| | | ||||| | | |||| |||| Sbjct 10080 AAGCGTAAGGCAGATTGGGCCTTCAAATGGATCTCA--TCCAACGAATCC-TTTGCTGAA 10024 Query 61489 CGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATC 61548 || || | || ||||| | ||||| || | || || ||| || || ||| | ||| Sbjct 10023 CGTCTGGTCGCCTTTGCCGCTGTCGAAGGCATCTTCTTTTCTGGCTCATTCGCCTCCATC 9964 Query 61549 TTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCA 61608 |||||||| ||||||||||| | ||||||||| ||||||| || ||||| ||||| | Sbjct 9963 TTTTGGTTAAAGAAACGTGGTTTGATGCCCGGTTTGACCTTTAGTAATGAATTGATCTGT 9904 Query 61609 CGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAAT 61668 || || || || | || ||| ||||| | | | |||| | | ||| || || Sbjct 9903 CGTGATGAAGGTCTTCACACTGACTTTGCCTGTCTCTTGTTCACCCAC-ATC-CGTAAAC 9846 Query 61669 CGTCC-GTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGA 61727 || ||| | | || || || || || || || || ||||||||| || Sbjct 9845 AACCCAGTC--AACAACGCGTCAAGGACATCATTGTAGAAGCCGTCGGTATCGAACAAGA 9788 Query 61728 ATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCA 61787 ||| ||| | || ||| |||| || || | ||||| ||||| | | |||| || Sbjct 9787 ATTCCTGTCGGATGCTCTGCCTGTTGCATTGATCGGTATGAACGCTACCTTGATGTGTCA 9728 Query 61788 GTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAA 61847 |||||| ||||| || || || ||||| |||||| | | || | | ||| || || Sbjct 9727 GTATATCGAATTCGTCGCTGATCGTCTCATGGTCGCTCTTGGATTCGACAAGATTTACAA 9668 Query 61848 TACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTT 61907 | | | |||||||| || || ||||||||||| || || | |||||||| || ||||| Sbjct 9667 TGCTACTAACCCATTCGACTTTATGGACATGATCTCCCTTCAAGGCAAGACCAACTTTTT 9608 Query 61908 CGAGAAACGTGTAGGCGACTATCAACGTTTGGGTGT 61943 || || ||||| || ||||||||| ||||| Sbjct 9607 TGAAAAGCGTGTTTCTGATTATCAACGTGCTGGTGT 9572 >seq3946 Length=52427 Score = 125 bits (138), Expect = 6e-24 Identities = 346/523 (66%), Gaps = 22/523 (4%) Strand=Plus/Minus Query 61429 AAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAA 61488 ||||| || || || ||||| ||||| ||||| | | | | | | | |||| ||| Sbjct 26528 AAGCGTAAGGCTGACTGGGCTTTCAAATGGATTTC---TGCTAATGATTCCTTTGCTGAG 26472 Query 61489 CGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATC 61548 || | | || ||||| | || || ||| |||| || || || ||||| | || Sbjct 26471 CGTCTTGTTGCTTTTGCTGCAGTAGAAGGTATATTCTTTTCCGGCTCATTTGCTTCTATT 26412 Query 61549 TTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCA 61608 |||||| | ||||||||||| | ||||||||| |||| || || ||||| ||||| | Sbjct 26411 TTTTGGCTTAAGAAACGTGGTTTGATGCCCGGTTTGACTTTTAGTAATGAATTGATTTGT 26352 Query 61609 CGCGACGAGGGCATGCATTGTGATTTTGC---TGTTTTG-CTATTCAAACGCTATCTGGT 61664 || ||||| || | ||| ||||| || | ||||| || ||| ||| | || Sbjct 26351 CGTGACGAAGGTCTTCATACCGATTTCGCTTGTCTTTTGTTTACTCA-----TAT-TCGT 26298 Query 61665 GAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACA 61724 || | || | | |||||| || ||| | || || ||| || ||||| Sbjct 26297 -AAACAACCTAGCCAACAACGTGTGAAGGATATTATAATGGAAGCTGTAGGCATTGAACA 26239 Query 61725 GGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTC 61784 ||||| | || || || || || || || | || || ||||||| | | |||| Sbjct 26238 AGAATTCTTAACCGATGCATTACCTGTTGCATTGATTGGTATGAATTCTACTTTGATGTG 26179 Query 61785 GCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGAT-TTGGGT---ATGAAGCGGA 61840 || || |||||||| ||||| || ||||| |||| | | |||||| || || | Sbjct 26178 TCAATACATTGAATTCGTTGCTGATCGTCTTATGGTTGCTCTTGGGTTCGATAAA----A 26123 Query 61841 TCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGA 61900 | |||| | | || || ||||| || ||||| |||||||| ||| | || ||||| | Sbjct 26122 TTTATATGGCAACGAATCCGTTTGACTTTATGGATATGATTTCACTGCAAGGAAAGACCA 26063 Query 61901 ATTTTTTCGAGAAACGTGTAGGCGACTATCAACGTTTGGGTGT 61943 | ||||| || || || || || ||||||||| ||||| Sbjct 26062 ACTTTTTTGAAAAGCGCGTTTCTGATTATCAACGTGCTGGTGT 26020 >seq2429 Length=29321 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/210 (70%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 65093 ATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTCTTGAGGCCAGCACGC 65152 ||||||| |||| | | | ||| | |||||||||||| ||||| | || | Sbjct 16950 ATCGCATCTACAGCGGGTCTAGACCTCAAATAGTACATGCCCGTCTTTAATCCTTTCTTC 16891 Query 65153 CAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCGGCCACATGCATA--T 65210 ||||||||||||||||| || | || ||| | || | || ||||| || ||| | Sbjct 16890 CAAGCATAGAAATGCATAGAAGTCAACTTTCCGAAACTTGGTTCGGC--AGTGAATAAGT 16833 Query 65211 TCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATGTCAATGATACGAC 65270 ||| ||| ||| |||||| || || |||||| || || ||||| ||||| || | Sbjct 16832 TCATCGATTGAGACTGATCAATATAGGCACCACGGTCAGCCGCCATATCAATAATGGTTC 16773 Query 65271 GTCCCGATATCTCCCAGACGGTCTTGTACA 65300 | ||| || ||||| || |||||||||| Sbjct 16772 TTTGCGAAATTTCCCACACAGTCTTGTACA 16743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397545876086240